Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.2e-110 403.3 213 100.0
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 4.1e-79 298.5 216 80.6
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 1.2e-70 270.4 217 77.0
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 5.3e-63 245.0 198 74.2
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 3.0e-42 176.0 205 57.6
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 3.0e-42 176.0 223 56.1
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 3.0e-42 176.0 223 56.1
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 5.7e-41 171.8 229 55.0
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 5.7e-41 171.8 220 52.3
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 7.5e-41 171.4 224 55.4
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 6.3e-40 168.3 226 54.0
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 1.4e-39 167.2 209 54.1
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 2.4e-39 166.4 207 54.6
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 3.1e-39 166.0 230 51.3
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.6e-38 163.7 218 54.1
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.6e-38 163.7 203 52.2
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 3.5e-38 162.5 224 52.7
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.0e-37 161.0 201 54.2
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.0e-37 161.0 227 51.5
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.2e-37 159.8 201 53.7
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.5e-36 157.1 230 48.3
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 4.2e-36 155.6 227 50.7
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 5.5e-36 155.2 219 51.6
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 9.4e-36 154.5 217 51.2
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.6e-35 153.7 230 47.8
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 1.0e-34 151.0 222 50.9
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 2.3e-34 149.8 203 50.2
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 3.0e-34 149.4 220 47.3
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 4.0e-34 149.1 208 52.9
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 6.8e-34 148.3 228 47.8
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.4e-33 146.0 199 49.2
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 4.4e-33 145.6 183 57.4
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.7e-32 143.7 201 51.2
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.0e-31 138.3 220 48.2
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.2e-30 137.5 214 47.2
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 3.5e-30 136.0 206 47.6
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 7.7e-30 134.8 215 49.3
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 7.7e-30 134.8 206 48.5
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-29 134.0 227 45.8
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 6.6e-29 131.7 215 46.0
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 8.6e-29 131.3 215 46.5
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.9e-28 130.2 182 48.9
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 3.3e-28 129.4 180 50.0
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 3.3e-28 129.4 222 50.5
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 4.3e-28 129.0 174 52.3
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 9.5e-28 127.9 220 46.4
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 1.2e-27 127.5 217 46.5
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 1.6e-27 127.1 219 43.8
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.6e-27 127.1 217 45.2
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 2.8e-27 126.3 197 49.7
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 2.8e-27 126.3 213 46.5
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 6.1e-27 125.2 217 46.1
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.1e-27 125.2 214 48.6
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.1e-27 125.2 217 48.4
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.3e-26 123.2 213 44.6
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 8.9e-26 121.3 218 45.0
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.2e-25 120.9 220 44.5
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.2e-25 120.9 210 46.2
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.7e-25 118.6 221 47.1
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.7e-25 118.6 221 47.1
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 1.3e-24 117.5 215 45.6
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.3e-24 117.5 185 44.9
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 4.9e-24 115.5 231 41.1
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 6.4e-24 115.2 174 48.3
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.1e-23 114.4 184 47.8
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 2.4e-23 113.2 193 48.2
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 5.4e-23 112.1 223 45.7
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 7.0e-23 111.7 193 48.7
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 9.2e-23 111.3 206 41.3
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 9.2e-23 111.3 209 40.7
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.6e-22 110.5 184 47.3
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 2.0e-22 110.2 162 50.6
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 2.7e-22 109.8 212 43.4
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.7e-22 109.8 236 41.9
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 3.5e-22 109.4 210 40.0
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.9e-22 108.6 193 48.2
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 7.8e-22 108.2 241 39.8
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.0e-21 107.8 161 50.9
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.3e-21 107.5 164 47.0
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 1.3e-21 107.5 193 46.1
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.7e-21 107.1 230 39.1
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.7e-21 107.1 177 45.8
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 8.6e-21 104.8 191 43.5
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.1e-20 104.4 231 39.0
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.1e-20 104.4 231 39.0
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.5e-20 104.0 210 40.0
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.5e-20 104.0 232 38.4
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.9e-20 103.6 231 39.0
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.9e-20 103.6 231 39.0
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.5e-20 103.2 215 41.9
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 2.5e-20 103.2 192 45.3
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 7.3e-20 101.7 237 40.1
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 1.6e-19 100.5 235 37.9
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.6e-19 100.5 177 45.2
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.8e-19 99.8 215 40.9
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.0e-19 98.2 176 44.3
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.0e-18 97.8 193 44.0
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.4e-18 97.4 231 38.1
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.4e-18 97.4 233 39.5
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 8.9e-18 94.7 203 39.4
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.2e-17 94.4 253 36.0
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.2e-17 94.4 188 41.5
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.5e-17 94.0 236 37.3
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.5e-17 94.0 106 50.0
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 2.6e-17 93.2 186 40.9
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.6e-17 93.2 242 37.6
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.3e-16 90.9 261 37.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.3e-16 90.9 165 44.2
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 6.4e-16 88.6 207 39.1
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-15 87.4 214 41.1
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 9.2e-15 84.7 199 38.7
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 9.2e-15 84.7 214 38.3
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.2e-14 84.3 211 39.3
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.6e-14 84.0 252 36.9
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 2.0e-14 83.6 234 38.9
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 2.0e-14 83.6 124 53.2
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 4.6e-14 82.4 106 53.8
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.0e-14 82.0 284 32.4
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 7.8e-14 81.6 114 49.1
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.7e-13 80.5 157 43.3
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 1.7e-13 80.5 264 34.5
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 3.0e-13 79.7 233 36.5
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.9e-13 79.3 154 41.6
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 6.6e-13 78.6 305 31.1
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 8.6e-13 78.2 131 41.2
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 8.6e-13 78.2 169 40.2
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.1e-12 77.8 175 41.1
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 5.6e-12 75.5 199 39.7
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 9.5e-12 74.7 222 32.9
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.2e-11 74.3 171 41.5
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 3.6e-11 72.8 221 32.6
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.6e-11 72.8 148 40.5
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.1e-10 71.2 262 29.8
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 4.0e-10 69.3 161 36.6
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.0e-09 67.0 122 43.4
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.6e-09 66.6 108 42.6
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 4.4e-09 65.9 158 38.0
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 5.8e-09 65.5 165 38.2
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 2.9e-08 63.2 194 32.5
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 3.7e-08 62.8 197 35.0
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.4e-08 62.0 300 27.0
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 8.3e-08 61.6 178 35.4
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 3.2e-07 59.7 190 33.7
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 7.1e-07 58.5 94 43.6
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 7.1e-07 58.5 178 34.3


User provided reference genes

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