Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 9.1e-84 313.5 159 100.0
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.2e-80 303.1 159 95.0
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 1.4e-76 289.7 159 88.7
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.0e-74 283.5 159 86.2
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 2.2e-74 282.3 155 87.7
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 2.2e-74 282.3 155 88.4
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 2.7e-72 275.4 155 85.2
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 8.0e-72 273.9 155 83.9
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 3.0e-71 271.9 158 81.6
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 5.2e-71 271.2 155 85.8
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 6.8e-71 270.8 155 83.2
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.8e-71 270.8 155 83.2
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.8e-71 270.8 155 83.2
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.8e-71 270.8 155 83.2
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.8e-71 270.8 155 83.2
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 6.8e-71 270.8 155 83.2
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 1.5e-70 269.6 157 82.2
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 1.5e-70 269.6 155 82.6
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.6e-70 268.9 157 82.8
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.6e-70 268.9 157 82.8
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.4e-70 268.5 159 79.9
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 3.4e-70 268.5 158 84.2
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 83.8
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.2e-69 265.8 154 83.1
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.2e-69 265.8 158 81.0
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 2.2e-69 265.8 155 81.9
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 2.8e-69 265.4 155 81.9
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.8e-69 265.4 158 81.0
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 3.7e-69 265.0 159 80.5
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.7e-69 265.0 154 83.1
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.8e-69 264.6 154 82.5
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 6.3e-69 264.2 153 83.0
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 6.3e-69 264.2 153 83.0
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 8.3e-69 263.8 158 80.4
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 8.3e-69 263.8 159 78.6
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.1e-68 263.5 159 79.9
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.1e-68 263.5 154 83.1
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.4e-68 263.1 154 82.5
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 1.8e-68 262.7 154 81.8
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 2.4e-68 262.3 157 80.9
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 7.0e-68 260.8 154 79.9
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 9.1e-68 260.4 154 80.5
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 9.1e-68 260.4 154 81.2
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.2e-67 260.0 159 79.9
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 3.5e-67 258.5 154 79.2
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 4.5e-67 258.1 249 58.6
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 4.5e-67 258.1 158 77.2
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.3e-66 256.5 154 80.5
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.7e-66 256.1 158 79.7
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.2e-66 255.8 158 79.7
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.2e-66 255.8 155 79.4
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 8.5e-66 253.8 154 77.3
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.5e-65 253.1 154 80.5
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.9e-65 252.7 155 78.1
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.5e-65 252.3 154 80.5
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.5e-65 252.3 154 78.6
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 2.5e-65 252.3 158 74.1
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 9.4e-65 250.4 151 77.5
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.6e-64 249.6 154 77.3
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 2.1e-64 249.2 158 76.6
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 2.1e-64 249.2 155 77.4
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 2.7e-64 248.8 154 78.6
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.7e-64 248.8 158 75.9
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 2.7e-64 248.8 154 78.6
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 2.7e-64 248.8 158 76.6
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.7e-64 248.8 158 75.3
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 6.1e-64 247.7 158 75.3
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 8.0e-64 247.3 158 76.6
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 8.0e-64 247.3 154 77.9
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 8.0e-64 247.3 154 76.6
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 8.0e-64 247.3 159 73.6
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 1.0e-63 246.9 154 77.3
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.0e-63 246.9 158 75.3
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.4e-63 246.5 158 76.6
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.4e-63 246.5 158 74.7
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 157 77.1
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.8e-63 246.1 154 76.6
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 76.0
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.3e-63 245.7 158 74.7
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 3.0e-63 245.4 154 77.3
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 3.0e-63 245.4 154 77.3
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.0e-63 245.4 155 76.1
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 5.2e-63 244.6 154 76.0
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 6.8e-63 244.2 153 77.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 6.8e-63 244.2 153 77.1
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 8.8e-63 243.8 154 78.6
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 153 77.1
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 2.6e-62 242.3 159 73.6
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 3.4e-62 241.9 159 74.2
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 3.4e-62 241.9 159 74.2
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 3.4e-62 241.9 159 74.2
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 3.4e-62 241.9 159 74.2
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 3.4e-62 241.9 159 74.2
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 3.4e-62 241.9 158 74.1
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 3.4e-62 241.9 158 72.8
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 7.5e-62 240.7 155 74.2
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 9.8e-62 240.4 138 82.6
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 9.8e-62 240.4 158 74.1
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.3e-61 240.0 155 74.2
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.8e-61 238.8 155 73.5
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 2.8e-61 238.8 154 75.3
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 3.7e-61 238.4 155 73.5
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 3.7e-61 238.4 155 73.5
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 3.7e-61 238.4 155 73.5
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 3.7e-61 238.4 151 76.8
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 3.7e-61 238.4 159 71.7
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 4.9e-61 238.0 153 69.9
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 2.4e-60 235.7 158 74.1
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 2.4e-60 235.7 158 74.1
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.2e-59 233.4 135 83.0
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 3.5e-59 231.9 207 58.9
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 5.0e-58 228.0 143 78.3
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 3.6e-56 221.9 142 74.6
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 4.7e-56 221.5 154 68.8
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 8.9e-55 217.2 144 72.2
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 9.8e-54 213.8 125 83.2
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 9.8e-54 213.8 154 64.3
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.4e-52 209.9 123 82.1
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.0e-51 206.1 156 66.0
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.0e-50 203.8 144 66.0
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.6e-48 196.4 157 61.8
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 4.7e-48 194.9 154 61.7
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 3.1e-47 192.2 123 75.6
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 7.5e-46 187.6 111 76.6
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.3e-45 186.8 302 39.7
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 1.7e-45 186.4 207 48.3
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.1e-44 183.7 187 52.4
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 5.6e-41 171.4 138 65.2
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 7.5e-38 161.0 99 82.8
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 2.9e-37 159.1 111 72.1
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 2.7e-35 152.5 156 48.7
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 6.0e-35 151.4 99 76.8
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 8.6e-34 147.5 133 55.6
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.1e-31 140.6 149 49.7
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 8.9e-31 137.5 149 48.3
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 8.4e-29 131.0 152 44.1
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.4e-28 130.2 132 51.5
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 6.0e-27 124.8 77 72.7
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 7.8e-27 124.4 146 52.7
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 8.6e-26 120.9 146 44.5
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 4.3e-25 118.6 132 46.2
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 8.1e-24 114.4 121 53.7
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 8.1e-24 114.4 121 53.7
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 3.1e-23 112.5 79 68.4
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-22 110.5 65 78.5
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 3.4e-22 109.0 84 64.3
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 3.4e-22 109.0 66 74.2
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 7.6e-22 107.8 144 41.0
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.9e-21 105.1 84 61.9
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 4.6e-19 98.6 101 58.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 2.5e-17 92.8 78 60.3
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 1.0e-10 70.9 157 35.0
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 2.3e-10 69.7 80 51.2
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-09 67.4 69 53.6
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 5.3e-07 58.5 44 68.2
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.5e-06 57.0 96 37.5


User provided reference genes

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