Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 2.6e-60 235.3 131 100.0
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 2.2e-43 179.1 131 80.2
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 3.8e-43 178.3 131 80.2
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 5.6e-39 164.5 110 75.5
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 1.2e-33 146.7 132 64.4
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 1.0e-19 100.5 130 49.2
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 2.9e-19 99.0 137 48.2
Cfa007314 Carpinus fangiana HOM05D000615 ORTHO05D007195 1.3e-16 90.1 135 54.1
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 3.0e-16 89.0 131 43.5
Haze_14778 Corylus avellana HOM05D007617 ORTHO05D007195 6.7e-16 87.8 127 52.0
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.3e-14 83.6 137 46.7
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 4.8e-14 81.6 136 42.6
Nn3g16639 Nelumbo nucifera HOM05D007617 ORTHO05D007195 3.1e-13 79.0 139 47.5
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 2.0e-12 76.3 139 45.3
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 2.6e-12 75.9 133 48.1
Nn4g22527 Nelumbo nucifera HOM05D007617 ORTHO05D007195 4.5e-12 75.1 141 46.8
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 1.0e-11 73.9 140 40.7
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.0e-11 73.9 137 43.1
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.0e-11 73.9 140 40.7
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 1.3e-11 73.6 131 45.0
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 2.9e-11 72.4 143 38.5
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 8.4e-11 70.9 138 46.4
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 1.9e-10 69.7 136 40.4
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 1.9e-10 69.7 136 40.4
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 1.9e-10 69.7 137 38.7
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 4.2e-10 68.6 135 40.0
TWI23G0333 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 4.2e-10 68.6 131 45.8
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 7.2e-10 67.8 137 40.9
Duzib205G1108 Durio zibethinus HOM05D011792 ORTHO05D007195 1.6e-09 66.6 147 45.6
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 2.1e-09 66.2 135 47.4
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 2.7e-09 65.9 145 37.2
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 6.1e-09 64.7 134 40.3
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 7.9e-09 64.3 65 58.5
TAR622G0315 Trochodendron aralioides HOM05D007617 ORTHO05D007195 7.9e-09 64.3 139 41.0
CANSAT80G0013 Cannabis sativa HOM05D007617 ORTHO05D007195 1.3e-08 63.5 136 40.4
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 1.3e-08 63.5 138 38.4
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 1.3e-08 63.5 138 42.8
Haze_07632 Corylus avellana HOM05D007617 ORTHO05D007195 1.8e-08 63.2 144 42.4
Prupe.5G161500 Prunus persica HOM05D007617 ORTHO05D007195 1.8e-08 63.2 143 42.0
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 1.8e-08 63.2 140 38.6
CiPaw.11G014400 Carya illinoinensis HOM05D007617 ORTHO05D007195 5.1e-08 61.6 148 41.9
Gohir.D12G189700 Gossypium hirsutum HOM05D011792 ORTHO05D007195 5.1e-08 61.6 142 42.3
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 5.1e-08 61.6 130 39.2
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 5.1e-08 61.6 136 41.9
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 6.7e-08 61.2 139 36.7
Actinidia36140 Actinidia chinensis HOM05D007617 ORTHO05D007195 8.7e-08 60.8 138 44.2
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 1.1e-07 60.5 127 37.8
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 1.1e-07 60.5 133 39.8
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 1.1e-07 60.5 64 53.1
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.1e-07 60.5 64 53.1
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.1e-07 60.5 64 53.1
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.1e-07 60.5 64 53.1
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 1.9e-07 59.7 136 37.5
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.5e-07 59.3 131 38.9
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.5e-07 59.3 131 38.9
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 2.5e-07 59.3 137 38.7
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 2.5e-07 59.3 136 36.8
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 3.3e-07 58.9 140 36.4
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 3.3e-07 58.9 145 39.3
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 4.3e-07 58.5 146 35.6
TWI39G0914 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 4.3e-07 58.5 143 42.7
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 5.7e-07 58.2 69 52.2
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 1.3e-06 57.0 136 37.5
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 1.3e-06 57.0 137 36.5
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 1.6e-06 56.6 134 37.3
Gorai.001G062900 Gossypium raimondii HOM05D011792 ORTHO05D007195 2.2e-06 56.2 134 42.5
Gohir.A07G055100 Gossypium hirsutum HOM05D011792 ORTHO05D007195 3.7e-06 55.5 153 37.3
Gohir.D07G059400 Gossypium hirsutum HOM05D011792 ORTHO05D007195 3.7e-06 55.5 136 42.6
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 4.8e-06 55.1 67 52.2
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 6.3e-06 54.7 131 33.6
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 8.2e-06 54.3 147 40.1


User provided reference genes

Program Settings