Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 0.0e+00 1680.6 823 100.0
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1308.1 717 89.0
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1306.2 717 88.8
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1085.1 718 74.5
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 5.6e-312 1074.7 712 74.3
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 1.8e-308 1062.4 718 72.6
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 1.2e-307 1059.7 714 72.3
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 1.3e-306 1056.2 718 72.6
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 4.9e-306 1054.3 718 71.6
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 5.0e-303 1044.3 719 70.9
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 1.5e-302 1042.7 713 71.5
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 5.6e-302 1040.8 742 69.4
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 1.3e-298 1029.6 753 68.4
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 3.7e-298 1028.1 711 69.9
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 1.1e-297 1026.5 711 69.6
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 2.1e-296 1022.3 712 70.4
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 2.7e-296 1021.9 718 70.1
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 1.3e-295 1019.6 717 69.9
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 5.1e-295 1017.7 714 69.9
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 8.6e-295 1016.9 735 67.8
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 3.3e-294 1015.0 733 67.5
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 2.8e-293 1011.9 719 68.3
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 1.1e-292 1010.0 717 69.2
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 4.1e-289 998.0 719 67.7
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 7.8e-288 993.8 726 67.9
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 1.7e-287 992.6 800 64.0
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 2.3e-287 992.3 719 67.6
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 3.3e-286 988.4 719 66.9
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 2.8e-285 985.3 719 67.7
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 3.1e-284 981.9 714 67.5
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 6.8e-284 980.7 754 64.7
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 3.8e-282 974.9 731 66.3
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 2.4e-281 972.2 718 65.7
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 7.1e-281 970.7 719 66.9
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 4.6e-280 968.0 718 65.6
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 1.7e-279 966.1 719 66.1
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 2.3e-279 965.7 719 66.2
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 3.0e-279 965.3 719 65.9
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 3.9e-279 964.9 718 65.3
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 6.6e-279 964.1 719 65.5
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 1.5e-278 963.0 719 64.7
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 2.5e-278 962.2 720 66.0
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 9.6e-278 960.3 720 66.0
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 3.6e-277 958.4 723 65.1
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 3.1e-276 955.3 713 66.8
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 5.3e-276 954.5 723 64.7
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 1.5e-275 953.0 717 64.9
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 5.8e-275 951.0 722 65.1
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 1.9e-273 946.0 769 61.5
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 3.5e-272 941.8 721 65.3
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 1.7e-271 939.5 722 64.8
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 3.3e-270 935.3 720 64.4
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 3.3e-270 935.3 731 63.3
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 7.3e-270 934.1 715 66.2
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 2.1e-269 932.6 715 65.7
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 2.8e-269 932.2 762 60.2
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 8.1e-269 930.6 720 64.9
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 9.0e-268 927.2 718 63.6
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 2.0e-267 926.0 721 64.4
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 1.7e-266 922.9 716 63.7
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 2.9e-266 922.2 719 63.6
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 1.1e-265 920.2 748 61.8
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 1.1e-265 920.2 717 64.9
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 1.9e-265 919.5 715 63.8
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 7.1e-265 917.5 719 63.6
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 9.3e-265 917.1 715 64.6
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 2.3e-263 912.5 720 62.4
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 3.0e-263 912.1 718 62.0
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 7.4e-262 907.5 720 62.4
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 2.8e-261 905.6 720 61.9
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 3.7e-261 905.2 712 64.2
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 5.3e-260 901.4 721 63.7
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 5.3e-260 901.4 721 63.7
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 1.5e-259 899.8 720 61.5
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 1.3e-258 896.7 762 60.0
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 2.9e-258 895.6 766 59.5
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 3.2e-257 892.1 714 64.0
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 2.1e-256 889.4 716 61.3
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 3.9e-255 885.2 711 63.6
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 6.7e-255 884.4 713 63.0
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 2.5e-254 882.5 723 62.9
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 4.8e-253 878.2 719 60.4
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 1.1e-252 877.1 610 70.8
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 4.8e-245 851.7 720 59.0
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.0e-242 844.0 718 57.0
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 4.2e-241 838.6 718 58.1
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 1.2e-240 837.0 722 56.8
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 5.7e-238 828.2 717 59.4
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 5.5e-233 811.6 605 66.0
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 3.0e-207 726.1 608 61.8
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.7e-195 686.4 717 49.4
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.2e-192 677.6 511 65.8
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 6.4e-173 612.1 457 65.6
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 1.6e-171 607.4 529 56.9
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 1.1e-167 594.7 457 64.8
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.4e-167 594.3 734 44.8
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 2.8e-160 570.1 739 43.3
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 1.5e-158 564.3 736 44.0
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 5.8e-142 509.2 430 59.1
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 1.9e-137 494.2 458 53.9
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 7.6e-134 482.3 379 63.9
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 3.8e-133 479.9 451 53.7
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.7e-125 454.5 464 49.4
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 4.8e-112 409.8 350 64.6
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.7e-104 384.8 305 64.9
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 4.5e-102 376.7 499 42.7
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.3e-85 322.0 309 57.9
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.1e-79 300.4 228 62.7
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 1.2e-73 282.3 230 61.3
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.0e-73 281.6 276 51.4
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 3.7e-72 277.3 492 36.4
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 7.3e-44 183.3 105 81.0
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.2e-39 167.9 189 47.6
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 5.1e-29 134.0 88 67.0
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 5.3e-26 124.0 758 22.7
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 7.6e-25 120.2 104 51.0
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 5.1e-21 107.5 58 84.5
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 3.1e-18 98.2 54 79.6
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.7e-16 92.4 76 55.3
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 8.7e-13 80.1 115 33.0
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 4.8e-11 74.3 57 56.1
MCO09G352 Micromonas commoda HOM05D006313 ORTHO05D007853 1.2e-09 69.7 181 30.4
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 7.7e-09 67.0 52 59.6
Pp3c19_11580 Physcomitrium patens HOM05D001597 ORTHO05D001512 1.1e-07 63.2 276 23.9
PSO339G0932 Papaver somniferum HOM05D000563 ORTHO05D000536 5.5e-07 60.8 158 32.3
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 7.2e-07 60.5 149 32.9
Medtr5g096700 Medicago truncatula HOM05D002322 ORTHO05D002536 7.2e-07 60.5 149 27.5
PSO384G4100 Papaver somniferum HOM05D000563 ORTHO05D000536 7.2e-07 60.5 159 32.1
DCAR_024880 Daucus carota HOM05D000563 ORTHO05D000536 9.4e-07 60.1 141 31.9
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 2.1e-06 58.9 162 28.4
PGSC0003DMG400004985 Solanum tuberosum HOM05D001597 ORTHO05D001512 2.1e-06 58.9 167 28.7
Dinv11353 Davidia involucrata HOM05D000563 ORTHO05D000536 2.7e-06 58.5 128 32.0
Eucgr.K01525 Eucalyptus grandis HOM05D000563 ORTHO05D000536 2.7e-06 58.5 124 35.5
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.7e-06 58.5 141 27.7
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 2.7e-06 58.5 141 31.2
Nn2g11235 Nelumbo nucifera HOM05D000563 ORTHO05D000536 3.6e-06 58.2 144 31.2
MELO3C010619.2 Cucumis melo HOM05D002322 ORTHO05D002536 4.7e-06 57.8 144 29.9
Os06g0507400 Oryza sativa ssp. japonica HOM05D001597 ORTHO05D001512 4.7e-06 57.8 171 26.9
Os08g0227400 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.7e-06 57.8 180 26.1
CBR_g18849 Chara braunii HOM05D006313 ORTHO05D132002 6.1e-06 57.4 79 39.2
Migut.F00745 Erythranthe guttata HOM05D000563 ORTHO05D000536 6.1e-06 57.4 117 32.5
TPR.G1305 Trifolium pratense HOM05D002322 ORTHO05D002536 6.1e-06 57.4 141 29.8
Hund20975 Selenicereus undatus HOM05D000563 ORTHO05D000536 7.9e-06 57.0 126 32.5
SGA_v2.0_scaffold2G01048 Striga asiatica HOM05D000563 ORTHO05D000536 7.9e-06 57.0 117 31.6
Zm00001eb414130 Zea mays HOM05D000563 ORTHO05D000536 7.9e-06 57.0 172 29.1


User provided reference genes

Program Settings