Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 2.4e-103 379.0 221 100.0
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 1.9e-79 299.7 222 82.0
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 6.3e-43 178.3 219 58.0
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 1.4e-42 177.2 165 66.1
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 2.4e-42 176.4 202 61.9
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 4.1e-42 175.6 200 57.5
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 5.4e-42 175.3 235 53.2
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 1.2e-41 174.1 232 55.6
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 1.6e-41 173.7 206 60.7
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 2.7e-41 172.9 232 55.6
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 3.5e-41 172.6 111 82.9
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 3.5e-41 172.6 122 76.2
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 1.0e-40 171.0 105 84.8
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 1.0e-40 171.0 105 84.8
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 2.3e-40 169.9 232 55.2
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 2.9e-40 169.5 121 75.2
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 2.9e-40 169.5 193 63.2
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 3.8e-40 169.1 235 53.6
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 5.0e-40 168.7 122 71.3
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 6.6e-40 168.3 121 75.2
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 8.6e-40 167.9 176 64.8
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 8.6e-40 167.9 180 65.6
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 8.6e-40 167.9 120 75.8
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.1e-39 167.5 112 79.5
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 1.9e-39 166.8 218 57.3
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 1.9e-39 166.8 236 54.2
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 2.5e-39 166.4 111 79.3
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 4.3e-39 165.6 112 79.5
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 5.6e-39 165.2 124 72.6
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 5.6e-39 165.2 179 64.8
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 7.3e-39 164.9 115 77.4
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 7.3e-39 164.9 119 73.1
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 7.3e-39 164.9 124 72.6
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 7.3e-39 164.9 121 72.7
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 9.5e-39 164.5 121 71.9
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.2e-38 164.1 122 71.3
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 1.2e-38 164.1 118 72.9
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 1.2e-38 164.1 122 73.8
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 1.6e-38 163.7 105 82.9
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.6e-38 163.7 118 76.3
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 1.6e-38 163.7 194 60.8
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 2.1e-38 163.3 113 77.9
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 2.1e-38 163.3 118 71.2
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.8e-38 162.9 122 71.3
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 3.6e-38 162.5 108 79.6
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 4.7e-38 162.2 112 75.9
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 6.1e-38 161.8 115 73.9
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 6.1e-38 161.8 121 71.9
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 8.0e-38 161.4 172 61.6
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.4e-37 160.6 114 75.4
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.4e-37 160.6 114 75.4
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 1.4e-37 160.6 108 77.8
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 1.8e-37 160.2 173 60.7
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 1.8e-37 160.2 121 71.1
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 2.3e-37 159.8 115 73.0
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 3.0e-37 159.5 119 72.3
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 3.0e-37 159.5 121 70.2
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 3.0e-37 159.5 122 69.7
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 4.0e-37 159.1 186 62.4
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 4.0e-37 159.1 186 55.9
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 5.2e-37 158.7 119 71.4
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 8.9e-37 157.9 116 73.3
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.2e-36 157.5 114 72.8
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 1.5e-36 157.1 115 73.0
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 1.5e-36 157.1 109 75.2
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 2.0e-36 156.8 108 77.8
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 2.6e-36 156.4 107 77.6
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 3.4e-36 156.0 189 61.9
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 3.4e-36 156.0 118 72.0
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 4.4e-36 155.6 108 76.9
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.4e-36 155.6 111 75.7
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.4e-36 155.6 111 75.7
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 5.7e-36 155.2 104 78.8
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 9.8e-36 154.5 111 73.9
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.7e-35 153.7 123 68.3
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 2.2e-35 153.3 111 73.0
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 2.9e-35 152.9 115 71.3
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 2.9e-35 152.9 168 64.9
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 3.7e-35 152.5 233 48.9
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 4.9e-35 152.1 254 48.8
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 6.4e-35 151.8 110 72.7
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 6.4e-35 151.8 124 66.1
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 6.4e-35 151.8 123 67.5
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 1.1e-34 151.0 107 74.8
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 1.8e-34 150.2 112 69.6
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 1.8e-34 150.2 113 69.0
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 1.8e-34 150.2 109 71.6
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 3.2e-34 149.4 109 71.6
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 3.2e-34 149.4 111 72.1
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 5.4e-34 148.7 125 66.4
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 7.0e-34 148.3 108 72.2
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 7.0e-34 148.3 108 72.2
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 7.0e-34 148.3 108 72.2
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 7.0e-34 148.3 108 72.2
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 7.0e-34 148.3 108 72.2
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 7.0e-34 148.3 108 72.2
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 9.2e-34 147.9 111 68.5
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 2.7e-33 146.4 120 65.8
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 3.5e-33 146.0 106 73.6
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 3.5e-33 146.0 112 68.8
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.0e-32 144.4 195 53.8
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.0e-32 144.4 107 72.0
ClCG03G014690 Citrullus lanatus HOM05D005425 ORTHO05D006686 3.0e-32 142.9 131 77.9
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 2.5e-31 139.8 165 52.7
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 7.3e-31 138.3 132 59.8
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 9.5e-31 137.9 105 68.6
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.1e-30 136.7 102 67.6
MELO3C015559.2 Cucumis melo HOM05D005425 ORTHO05D006686 8.0e-30 134.8 136 72.1
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.0e-29 134.4 96 75.0
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.0e-29 134.4 111 62.2
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 1.8e-29 133.7 102 63.7
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 1.8e-29 133.7 104 65.4
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.3e-29 133.3 108 65.7
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 3.1e-29 132.9 264 45.1
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 4.0e-29 132.5 108 64.8
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 5.2e-29 132.1 153 58.2
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 6.8e-29 131.7 104 67.3
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 1.5e-28 130.6 102 66.7
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.6e-28 129.8 108 64.8
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.3e-27 127.5 103 62.1
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 1.7e-27 127.1 114 62.3
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 6.4e-27 125.2 105 64.8
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 1.1e-26 124.4 105 63.8
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 1.4e-26 124.0 105 63.8
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 2.4e-26 123.2 105 62.9
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 2.4e-26 123.2 105 62.9
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 2.4e-26 123.2 105 62.9
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 2.4e-26 123.2 105 63.8
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 3.2e-26 122.9 104 63.5
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 4.1e-26 122.5 97 63.9
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 7.0e-26 121.7 105 61.9
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 4.6e-25 119.0 105 61.9
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 7.8e-25 118.2 105 61.0
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 1.0e-24 117.9 105 61.9
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 2.3e-24 116.7 104 65.4
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 3.0e-24 116.3 110 63.6
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 4.7e-22 109.0 95 58.9
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 8.3e-19 98.2 86 61.6
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.3e-16 90.9 76 67.1
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 3.0e-16 89.7 105 48.6
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 3.5e-09 66.2 116 48.3
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 3.5e-09 66.2 64 60.9
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 5.1e-08 62.4 171 42.1
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 6.6e-08 62.0 75 52.0
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 8.6e-08 61.6 102 40.2
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 8.6e-08 61.6 100 41.0
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 1.9e-07 60.5 104 42.3
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 1.9e-07 60.5 104 42.3
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 1.9e-07 60.5 102 40.2
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 1.9e-07 60.5 102 41.2
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 5.6e-07 58.9 103 40.8
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 5.6e-07 58.9 102 39.2
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 5.6e-07 58.9 102 39.2
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 7.3e-07 58.5 104 40.4
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 7.3e-07 58.5 102 39.2
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 7.3e-07 58.5 102 39.2
THA.LOC104798774 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 9.6e-07 58.2 102 40.2
Gohir.D01G066100 Gossypium hirsutum HOM05D004888 ORTHO05D005792 1.2e-06 57.8 100 39.0
Gorai.002G088000 Gossypium raimondii HOM05D004888 ORTHO05D005792 1.2e-06 57.8 100 39.0
Mapoly0043s0001 Marchantia polymorpha HOM05D004888 ORTHO05D005792 1.2e-06 57.8 101 41.6
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 1.2e-06 57.8 102 39.2
PGR031G1607 Punica granatum HOM05D004888 ORTHO05D005792 1.2e-06 57.8 102 41.2
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 1.6e-06 57.4 102 40.2
CDE05G3279 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 1.6e-06 57.4 102 39.2
CDE11G1067 Ceratophyllum demersum HOM05D004888 ORTHO05D005792 1.6e-06 57.4 102 39.2
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 1.6e-06 57.4 100 40.0
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 1.6e-06 57.4 102 37.3
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 1.6e-06 57.4 102 39.2
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 1.6e-06 57.4 102 41.2
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 2.1e-06 57.0 102 40.2
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 2.1e-06 57.0 96 40.6
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 2.1e-06 57.0 102 39.2
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 2.1e-06 57.0 35 82.9
A03p41780 Brassica napus HOM05D001160 ORTHO05D005792 2.8e-06 56.6 102 41.2
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 2.8e-06 56.6 102 38.2
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 2.8e-06 56.6 107 35.5
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 3.6e-06 56.2 102 40.2
Thhalv10011871m.g Eutrema salsugineum HOM05D004888 ORTHO05D005792 3.6e-06 56.2 102 41.2
Actinidia05101 Actinidia chinensis HOM05D004888 ORTHO05D005792 4.7e-06 55.8 102 40.2
BcaC01g03552 Brassica carinata HOM05D001160 ORTHO05D001092 4.7e-06 55.8 102 40.2
BolC3t17405H Brassica oleracea HOM05D001160 ORTHO05D001092 4.7e-06 55.8 102 40.2
THA.LOC104817873 Tarenaya hassleriana HOM05D004888 ORTHO05D005792 4.7e-06 55.8 102 40.2
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 6.2e-06 55.5 103 38.8
CANSAT10G0001 Cannabis sativa HOM05D004888 ORTHO05D005792 8.1e-06 55.1 102 40.2
CANSAT21G1950 Cannabis sativa HOM05D004888 ORTHO05D005792 8.1e-06 55.1 102 40.2
Sed0003457 Sechium edule HOM05D004888 ORTHO05D005792 8.1e-06 55.1 100 42.0


User provided reference genes

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