Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015208 Sechium edule HOM05D001981 ORTHO05D000470 1.4e-78 296.2 144 100.0
MELO3C020425.2 Cucumis melo HOM05D001981 ORTHO05D000470 1.2e-26 123.6 135 55.6
Sed0001043 Sechium edule HOM05D001981 ORTHO05D000470 4.6e-26 121.7 135 56.3
CSS0033730 Camellia sinensis var. sinensis HOM05D001981 ORTHO05D000470 6.6e-25 117.9 135 53.3
CANSAT78G0914 Cannabis sativa HOM05D001981 ORTHO05D000470 1.5e-24 116.7 134 52.2
CANSAT78G1622 Cannabis sativa HOM05D001981 ORTHO05D000470 1.5e-24 116.7 134 52.2
CSS0022287 Camellia sinensis var. sinensis HOM05D001981 ORTHO05D000470 3.3e-24 115.5 134 53.0
Manes.03G144800 Manihot esculenta HOM05D001981 ORTHO05D000470 3.3e-24 115.5 134 52.2
Sabra17G0052000 Salix brachista HOM05D001981 ORTHO05D000470 4.3e-24 115.2 134 52.2
Potri.017G058400 Populus trichocarpa HOM05D001981 ORTHO05D000470 1.2e-23 113.6 132 53.8
COL.COLO4_20218 Corchorus olitorius HOM05D001981 ORTHO05D000470 2.8e-23 112.5 135 50.4
TAR636G3299 Trochodendron aralioides HOM05D001981 ORTHO05D000470 2.8e-23 112.5 135 50.4
Dinv27206 Davidia involucrata HOM05D001981 ORTHO05D000470 4.7e-23 111.7 134 51.5
vmacro00442 Vaccinium macrocarpon HOM05D001981 ORTHO05D000470 4.7e-23 111.7 135 51.1
Haze_11646 Corylus avellana HOM05D001981 ORTHO05D000470 6.2e-23 111.3 132 52.3
QL06p026193 Quercus lobata HOM05D001981 ORTHO05D000470 6.2e-23 111.3 135 49.6
Duzib151G0653 Durio zibethinus HOM05D001981 ORTHO05D000470 8.1e-23 110.9 134 50.0
Manes.15G056300 Manihot esculenta HOM05D001981 ORTHO05D000470 8.1e-23 110.9 133 50.4
Thecc.04G196100 Theobroma cacao HOM05D001981 ORTHO05D000470 1.4e-22 110.2 135 49.6
Nitab4.5_0006920g0050 Nicotiana tabacum HOM05D001981 ORTHO05D000470 2.4e-22 109.4 133 49.6
VMungo0251G1994 Vigna mungo HOM05D001981 ORTHO05D000470 2.4e-22 109.4 133 48.9
CiPaw.01G117600 Carya illinoinensis HOM05D001981 ORTHO05D000470 3.1e-22 109.0 134 50.0
Cpa.g.sc83.43 Carica papaya HOM05D001981 ORTHO05D000470 5.2e-22 108.2 135 51.1
TWI73G0353 Tripterygium wilfordii HOM05D001981 ORTHO05D000470 5.2e-22 108.2 134 50.0
Phvul.003G050500 Phaseolus vulgaris HOM05D001981 ORTHO05D000470 6.9e-22 107.8 132 48.5
Potri.001G319100 Populus trichocarpa HOM05D001981 ORTHO05D000470 6.9e-22 107.8 134 49.3
Actinidia33178 Actinidia chinensis HOM05D001981 ORTHO05D000470 9.0e-22 107.5 135 48.9
FvH4_4g13370 Fragaria vesca HOM05D001981 ORTHO05D000470 9.0e-22 107.5 141 49.6
FAN12G2206 Fragaria x ananassa HOM05D001981 ORTHO05D000470 9.0e-22 107.5 141 49.6
RcHm_v2.0_Chr4g0413741 Rosa chinensis HOM05D001981 ORTHO05D000470 9.0e-22 107.5 141 48.9
Gohir.D02G022900 Gossypium hirsutum HOM05D001981 ORTHO05D000470 1.2e-21 107.1 134 48.5
Gorai.005G028300 Gossypium raimondii HOM05D001981 ORTHO05D000470 1.2e-21 107.1 134 48.5
PGSC0003DMG400015755 Solanum tuberosum HOM05D001981 ORTHO05D000470 1.2e-21 107.1 133 50.4
Actinidia35845 Actinidia chinensis HOM05D001981 ORTHO05D000470 1.5e-21 106.7 135 48.1
MSTRG.4241 Avicennia marina HOM05D001981 ORTHO05D000470 1.5e-21 106.7 141 48.2
CAN.G765.35 Capsicum annuum HOM05D001981 ORTHO05D000470 1.5e-21 106.7 133 48.1
FAN22G2298 Fragaria x ananassa HOM05D001981 ORTHO05D000470 1.5e-21 106.7 141 48.9
Gohir.A02G019600 Gossypium hirsutum HOM05D001981 ORTHO05D000470 1.5e-21 106.7 134 48.5
CiPaw.02G064900 Carya illinoinensis HOM05D001981 ORTHO05D000470 2.0e-21 106.3 134 49.3
Nitab4.5_0006920g0040 Nicotiana tabacum HOM05D001981 ORTHO05D000470 2.0e-21 106.3 140 47.9
Atru.chr4.1595 Acer truncatum HOM05D001981 ORTHO05D000470 2.6e-21 105.9 135 48.1
ATR0749G009 Amborella trichopoda HOM05D001981 ORTHO05D000470 2.6e-21 105.9 133 49.6
Glyma.05G152800 Glycine max HOM05D001981 ORTHO05D000470 2.6e-21 105.9 133 49.6
DCAR_026642 Daucus carota HOM05D001981 ORTHO05D000470 3.4e-21 105.5 142 45.1
Eucgr.H02689 Eucalyptus grandis HOM05D001981 ORTHO05D000470 3.4e-21 105.5 134 47.8
FAN07G2808 Fragaria x ananassa HOM05D001981 ORTHO05D000470 3.4e-21 105.5 141 48.2
Glyma.08G109700 Glycine max HOM05D001981 ORTHO05D000470 7.6e-21 104.4 134 47.0
Sc13g0000360 Simmondsia chinensis HOM05D001981 ORTHO05D000470 7.6e-21 104.4 134 48.5
MBI11_g07409_MAGBIO Magnolia biondii HOM05D001981 ORTHO05D000470 9.9e-21 104.0 140 47.1
Prupe.1G163300 Prunus persica HOM05D001981 ORTHO05D000470 9.9e-21 104.0 141 47.5
Sabra16G0202000 Salix brachista HOM05D001981 ORTHO05D000470 9.9e-21 104.0 134 48.5
Solyc05g053760.4 Solanum lycopersicum HOM05D001981 ORTHO05D000470 9.9e-21 104.0 133 48.9
Sopen05g032230 Solanum pennellii HOM05D001981 ORTHO05D000470 9.9e-21 104.0 133 48.9
FAN17G0039 Fragaria x ananassa HOM05D001981 ORTHO05D000470 1.3e-20 103.6 141 48.2
TAR365G0430 Trochodendron aralioides HOM05D001981 ORTHO05D000470 1.3e-20 103.6 135 47.4
GSVIVG01021014001 Vitis vinifera HOM05D001981 ORTHO05D000470 1.3e-20 103.6 134 47.8
arahy.Tifrunner.gnm1.ann1.DM5ZEB Arachis hypogaea HOM05D001981 ORTHO05D000470 2.2e-20 102.8 136 48.5
Lj4g0015471 Lotus japonicus HOM05D001981 ORTHO05D000470 2.2e-20 102.8 133 48.1
MD04G1016600 Malus domestica HOM05D001981 ORTHO05D000470 2.2e-20 102.8 134 49.3
SGA_v2.0_scaffold19G08776 Striga asiatica HOM05D001981 ORTHO05D000470 2.2e-20 102.8 134 47.0
Duzib268G0016 Durio zibethinus HOM05D001981 ORTHO05D000470 2.9e-20 102.4 134 47.8
Oeu049045.1 Olea europaea HOM05D001981 ORTHO05D000470 2.9e-20 102.4 133 49.6
Oeu056421.1 Olea europaea HOM05D001981 ORTHO05D000470 3.8e-20 102.1 142 47.2
PSO017G5660 Papaver somniferum HOM05D001981 ORTHO05D000470 6.4e-20 101.3 137 46.0
MELO3C006295.2 Cucumis melo HOM05D001981 ORTHO05D000470 8.4e-20 100.9 140 45.7
PSO063G2397 Papaver somniferum HOM05D001981 ORTHO05D000470 8.4e-20 100.9 137 45.3
CAN.G1155.23 Capsicum annuum HOM05D001981 ORTHO05D000470 1.9e-19 99.8 133 46.6
Aa31LG9G3710 Aethionema arabicum HOM05D001981 ORTHO05D000470 2.4e-19 99.4 138 44.9
Nn1g08216 Nelumbo nucifera HOM05D001981 ORTHO05D000470 2.4e-19 99.4 135 45.9
AUR62020857 Chenopodium quinoa HOM05D001981 ORTHO05D000470 3.2e-19 99.0 138 46.4
Lalb_Chr12g0205591 Lupinus albus HOM05D001981 ORTHO05D000470 3.2e-19 99.0 137 43.1
TPR.G11800 Trifolium pratense HOM05D001981 ORTHO05D000470 3.2e-19 99.0 136 44.1
Lalb_Chr07g0186811 Lupinus albus HOM05D001981 ORTHO05D000470 4.2e-19 98.6 133 44.4
Oeu043442.1 Olea europaea HOM05D001981 ORTHO05D000470 4.2e-19 98.6 140 43.6
Dinv19153 Davidia involucrata HOM05D001981 ORTHO05D000470 5.4e-19 98.2 140 45.7
HPP92_024555 Vanilla planifolia HOM05D001981 ORTHO05D000470 5.4e-19 98.2 140 44.3
AUR62018562 Chenopodium quinoa HOM05D001981 ORTHO05D000470 7.1e-19 97.8 138 45.7
Lj2A1123T27 Lonicera japonica HOM05D001981 ORTHO05D000470 7.1e-19 97.8 140 45.0
ClCG05G003140 Citrullus lanatus HOM05D001981 ORTHO05D000470 9.3e-19 97.4 140 45.0
Dinv28844 Davidia involucrata HOM05D001981 ORTHO05D000470 9.3e-19 97.4 140 45.7
EL10Ac3g07460 Beta vulgaris HOM05D001981 ORTHO05D000470 1.2e-18 97.1 138 44.2
PGSC0003DMG400024357 Solanum tuberosum HOM05D001981 ORTHO05D000470 1.6e-18 96.7 133 45.1
Medtr8g081620 Medicago truncatula HOM05D001981 ORTHO05D000470 3.5e-18 95.5 139 44.6
Lj2A1122T46 Lonicera japonica HOM05D001981 ORTHO05D000470 4.6e-18 95.1 134 47.0
CsaV3_3G010760 Cucumis sativus L. HOM05D001981 ORTHO05D000470 7.8e-18 94.4 134 44.8
Hma1.2p1_0226F.1_g095270 Hydrangea macrophylla HOM05D001981 ORTHO05D000470 1.0e-17 94.0 140 45.7
Sopen09g035190 Solanum pennellii HOM05D001981 ORTHO05D000470 1.3e-17 93.6 133 44.4
CSS0007918 Camellia sinensis var. sinensis HOM05D001981 ORTHO05D000470 1.7e-17 93.2 156 41.0
DCAR_012675 Daucus carota HOM05D001981 ORTHO05D000470 1.7e-17 93.2 136 43.4
Lj2C1122T16 Lonicera japonica HOM05D001981 ORTHO05D000470 1.7e-17 93.2 134 47.8
Solyc09g092260.4 Solanum lycopersicum HOM05D001981 ORTHO05D000470 1.7e-17 93.2 133 44.4
MSTRG.9802 Avicennia marina HOM05D001981 ORTHO05D000470 3.0e-17 92.4 136 47.1
TAR362G0698 Trochodendron aralioides HOM05D001981 ORTHO05D000470 5.1e-17 91.7 141 42.6
Sed0014992 Sechium edule HOM05D001981 ORTHO05D000470 6.6e-17 91.3 140 42.9
HanXRQChr14g0435821 Helianthus annuus HOM05D001981 ORTHO05D000470 8.7e-17 90.9 138 42.8
Nitab4.5_0000697g0070 Nicotiana tabacum HOM05D001981 ORTHO05D000470 8.7e-17 90.9 135 45.2
THA.LOC104822222 Tarenaya hassleriana HOM05D001981 ORTHO05D000470 1.5e-16 90.1 134 43.3
DCAR_000513 Daucus carota HOM05D001981 ORTHO05D000470 2.5e-16 89.4 128 44.5
DCAR_000514 Daucus carota HOM05D001981 ORTHO05D000470 2.5e-16 89.4 128 44.5
Lsat_1_v5_gn_2_45860 Lactuca sativa HOM05D001981 ORTHO05D000470 2.5e-16 89.4 133 44.4
Psat7g074760 Pisum sativum HOM05D001981 ORTHO05D000470 4.3e-16 88.6 136 42.6
CARHR219740 Cardamine hirsuta HOM05D001981 ORTHO05D000470 7.3e-16 87.8 134 42.5
Sp7g11630 Schrenkiella parvula HOM05D001981 ORTHO05D000470 7.3e-16 87.8 138 41.3
Hma1.2p1_0149F.1_g066450 Hydrangea macrophylla HOM05D001981 ORTHO05D000470 9.6e-16 87.4 135 43.7
Oeu055764.1 Olea europaea HOM05D001981 ORTHO05D000470 9.6e-16 87.4 117 49.6
BraA04t16521Z Brassica rapa HOM05D001981 ORTHO05D000470 1.3e-15 87.0 138 40.6
Ciclev10006058m.g Citrus clementina HOM05D001981 ORTHO05D000470 1.3e-15 87.0 88 56.8
COL.COLO4_28328 Corchorus olitorius HOM05D001981 ORTHO05D000470 1.3e-15 87.0 131 43.5
A04p08340 Brassica napus HOM05D001981 ORTHO05D000470 1.6e-15 86.7 138 40.6
ECA238G3760 Erigeron canadensis HOM05D001981 ORTHO05D000470 1.6e-15 86.7 133 42.9
Manes.12G049000 Manihot esculenta HOM05D001981 ORTHO05D000470 1.6e-15 86.7 134 42.5
Zm00001eb127110 Zea mays HOM05D001981 ORTHO05D000470 1.6e-15 86.7 141 41.1
Aqoxy2G03943 Aquilegia oxysepala HOM05D001981 ORTHO05D000470 2.1e-15 86.3 134 42.5
BolC4t25788H Brassica oleracea HOM05D001981 ORTHO05D000470 2.8e-15 85.9 138 39.9
Thhalv10026283m.g Eutrema salsugineum HOM05D001981 ORTHO05D000470 2.8e-15 85.9 134 41.8
C04p42030 Brassica napus HOM05D001981 ORTHO05D000470 3.6e-15 85.5 138 39.9
Migut.G00756 Erythranthe guttata HOM05D001981 ORTHO05D000470 4.8e-15 85.1 87 56.3
Lj6P384T14 Lonicera japonica HOM05D001981 ORTHO05D000470 4.8e-15 85.1 94 51.1
Atru.chr6.1441 Acer truncatum HOM05D001981 ORTHO05D000470 6.2e-15 84.7 119 42.9
TWI75G1357 Tripterygium wilfordii HOM05D001981 ORTHO05D000470 6.2e-15 84.7 140 42.9
BolC8t47608H Brassica oleracea HOM05D001981 ORTHO05D000470 8.1e-15 84.3 134 40.3
AL7G42690 Arabidopsis lyrata HOM05D001981 ORTHO05D000470 1.1e-14 84.0 138 39.9
BcaB04g17644 Brassica carinata HOM05D001981 ORTHO05D000470 1.1e-14 84.0 138 39.9
BcaC07g37323 Brassica carinata HOM05D001981 ORTHO05D000470 1.1e-14 84.0 134 40.3
Ciclev10022177m.g Citrus clementina HOM05D001981 ORTHO05D000470 1.1e-14 84.0 140 40.7
A08p06610 Brassica napus HOM05D001981 ORTHO05D000470 1.4e-14 83.6 138 39.9
BraA08t32679Z Brassica rapa HOM05D001981 ORTHO05D000470 1.4e-14 83.6 138 39.9
C08p07610 Brassica napus HOM05D001981 ORTHO05D000470 2.4e-14 82.8 134 40.3
Carub.0007s2861 Capsella rubella HOM05D001981 ORTHO05D000470 2.4e-14 82.8 138 39.1
Cc01_g16570 Coffea canephora HOM05D001981 ORTHO05D000470 3.1e-14 82.4 154 35.7
Lsat_1_v5_gn_5_177661 Lactuca sativa HOM05D001981 ORTHO05D000470 3.1e-14 82.4 129 43.4
BcaC02g09383 Brassica carinata HOM05D001981 ORTHO05D000470 4.0e-14 82.0 138 39.1
arahy.Tifrunner.gnm1.ann1.56FJP3 Arachis hypogaea HOM05D001981 ORTHO05D000470 5.3e-14 81.6 87 51.7
vmacro02789 Vaccinium macrocarpon HOM05D001981 ORTHO05D000470 5.3e-14 81.6 133 42.1
GSVIVG01006408001 Vitis vinifera HOM05D001981 ORTHO05D000470 5.3e-14 81.6 135 40.0
CDE05G1671 Ceratophyllum demersum HOM05D001981 ORTHO05D000470 6.9e-14 81.3 142 41.5
HanXRQChr01g0015381 Helianthus annuus HOM05D001981 ORTHO05D000470 6.9e-14 81.3 134 40.3
Actinidia23396 Actinidia chinensis HOM05D001981 ORTHO05D000470 9.0e-14 80.9 133 41.4
DCAR_004742 Daucus carota HOM05D001981 ORTHO05D000470 9.0e-14 80.9 137 39.4
Zm00001eb334090 Zea mays HOM05D001981 ORTHO05D000470 9.0e-14 80.9 140 39.3
Manes.12G049100 Manihot esculenta HOM05D001981 ORTHO05D000470 1.2e-13 80.5 134 41.8
Manes.13G050600 Manihot esculenta HOM05D001981 ORTHO05D000470 1.2e-13 80.5 134 42.5
Lsat_1_v5_gn_8_89160 Lactuca sativa HOM05D001981 ORTHO05D000470 2.6e-13 79.3 140 38.6
Manes.13G050700 Manihot esculenta HOM05D001981 ORTHO05D000470 2.6e-13 79.3 134 41.8
arahy.Tifrunner.gnm1.ann1.FUJV0P Arachis hypogaea HOM05D001981 ORTHO05D000470 3.4e-13 79.0 137 38.0
Oeu063464.1 Olea europaea HOM05D001981 ORTHO05D000470 4.5e-13 78.6 135 43.0
Nitab4.5_0003502g0100 Nicotiana tabacum HOM05D001981 ORTHO05D000470 5.8e-13 78.2 87 51.7
Nn3g20062 Nelumbo nucifera HOM05D001981 ORTHO05D000470 7.6e-13 77.8 88 51.1
PGR083G2750 Punica granatum HOM05D001981 ORTHO05D000470 9.9e-13 77.4 134 41.0
TWI36G1385 Tripterygium wilfordii HOM05D001981 ORTHO05D000470 9.9e-13 77.4 142 42.3
Nitab4.5_0002223g0050 Nicotiana tabacum HOM05D001981 ORTHO05D000470 1.3e-12 77.0 93 51.6
Os01g0101700 Oryza sativa ssp. japonica HOM05D001981 ORTHO05D000470 1.3e-12 77.0 141 39.0
Rhsim13G0049800 Rhododendron simsii HOM05D001981 ORTHO05D000470 2.2e-12 76.3 134 41.0
Ca_17979_v3 Cicer arietinum L. HOM05D001981 ORTHO05D000470 2.9e-12 75.9 113 44.2
MSTRG.20973 Avicennia marina HOM05D001981 ORTHO05D000470 1.4e-11 73.6 131 38.2
Sed0002206 Sechium edule HOM05D001981 ORTHO05D000470 1.9e-11 73.2 82 52.4
Oeu051520.1 Olea europaea HOM05D001981 ORTHO05D000470 3.2e-11 72.4 127 38.6
Psat5g100680 Pisum sativum HOM05D001981 ORTHO05D000470 7.1e-11 71.2 135 36.3
Eucgr.K02127 Eucalyptus grandis HOM05D001981 ORTHO05D000470 1.6e-10 70.1 137 38.0
MSTRG.18830 Avicennia marina HOM05D001981 ORTHO05D000470 2.7e-10 69.3 139 36.7
Manes.13G050800 Manihot esculenta HOM05D001981 ORTHO05D000470 7.9e-10 67.8 94 47.9
Aa31LG8G10450 Aethionema arabicum HOM05D001981 ORTHO05D000470 1.0e-09 67.4 87 43.7
arahy.Tifrunner.gnm1.ann1.X9WDFL Arachis hypogaea HOM05D001981 ORTHO05D000470 2.3e-09 66.2 133 35.3
Oeu051524.1 Olea europaea HOM05D001981 ORTHO05D000470 3.9e-09 65.5 135 36.3
unitig_736.g22346 Utricularia gibba HOM05D001408 ORTHO05D001312 5.1e-09 65.1 147 34.7
AT4G13830 Arabidopsis thaliana HOM05D001981 ORTHO05D000470 8.7e-09 64.3 117 35.0
Migut.D02510 Erythranthe guttata HOM05D001981 ORTHO05D000470 8.7e-09 64.3 142 33.1
ECA248G3728 Erigeron canadensis HOM05D001981 ORTHO05D000470 1.1e-08 63.9 106 38.7
Lalb_Chr07g0186801 Lupinus albus HOM05D001981 ORTHO05D000470 1.1e-08 63.9 79 48.1
Oeu051525.1 Olea europaea HOM05D001981 ORTHO05D000470 1.5e-08 63.5 80 47.5
HanXRQChr06g0172241 Helianthus annuus HOM05D001981 ORTHO05D000470 1.9e-08 63.2 134 35.8
HanXRQChr06g0172251 Helianthus annuus HOM05D001981 ORTHO05D000470 1.9e-08 63.2 134 35.1
Oeu007780.1 Olea europaea HOM05D001981 ORTHO05D000470 1.9e-08 63.2 87 44.8
AagrBONN_evm.TU.Sc2ySwM_368.1951 Anthoceros agrestis HOM05D001981 ORTHO05D000470 2.5e-08 62.8 133 36.1
FAN26G3225 Fragaria x ananassa HOM05D000631 ORTHO05D000524 2.5e-08 62.8 114 39.5
SalBow6G6331 Salvia bowleyana HOM05D001981 ORTHO05D000470 3.3e-08 62.4 141 34.8
ECA236G1704 Erigeron canadensis HOM05D001981 ORTHO05D000470 4.3e-08 62.0 105 39.0
SGA_v2.0_scaffold156G37275 Striga asiatica HOM05D001981 ORTHO05D000470 9.6e-08 60.8 141 33.3
Lalb_Chr23g0278381 Lupinus albus HOM05D001981 ORTHO05D000470 1.6e-07 60.1 134 38.1
Oeu051521.1 Olea europaea HOM05D001981 ORTHO05D000470 1.6e-07 60.1 134 34.3
ECA248G0249 Erigeron canadensis HOM05D001981 ORTHO05D000470 2.8e-07 59.3 108 38.9
Oeu063060.1 Olea europaea HOM05D001981 ORTHO05D000470 3.7e-07 58.9 111 35.1
Nitab4.5_0002260g0120 Nicotiana tabacum HOM05D001981 ORTHO05D000470 6.2e-07 58.2 117 35.9
CDE05G3534 Ceratophyllum demersum HOM05D003330 ORTHO05D003805 4.0e-06 55.5 118 35.6
Migut.D02509 Erythranthe guttata HOM05D001981 ORTHO05D000470 4.0e-06 55.5 84 42.9
Cc03_g08400 Coffea canephora HOM05D001981 ORTHO05D000470 5.3e-06 55.1 66 47.0
ECA248G2422 Erigeron canadensis HOM05D001981 ORTHO05D000470 9.0e-06 54.3 113 34.5


User provided reference genes

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