Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 1.7e-46 188.7 82 100.0
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.7e-25 119.0 91 59.3
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 1.0e-22 109.8 87 58.6
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 5.7e-13 77.4 83 47.0
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 4.8e-12 74.3 77 50.6
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 8.2e-12 73.6 60 55.0
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.1e-11 73.2 58 55.2
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.1e-11 73.2 74 47.3
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.8e-11 72.4 58 55.2
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 3.1e-11 71.6 81 44.4
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.3e-11 70.9 58 53.4
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.3e-11 70.9 58 53.4
CsaV3_4G025600 Cucumis sativus L. HOM05D006892 ORTHO05D008592 6.9e-11 70.5 71 53.5
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 6.9e-11 70.5 45 64.4
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 6.9e-11 70.5 41 68.3
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 9.0e-11 70.1 58 53.4
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 9.0e-11 70.1 45 64.4
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 1.2e-10 69.7 74 47.3
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-10 69.3 84 44.0
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-10 69.3 84 44.0
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.5e-10 69.3 84 44.0
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 3.4e-10 68.2 41 65.9
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 4.5e-10 67.8 76 47.4
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.5e-10 67.8 53 54.7
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 5.8e-10 67.4 74 47.3
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.0e-09 66.6 63 52.4
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.3e-09 66.2 89 41.6
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.7e-09 65.9 90 42.2
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.7e-09 65.9 62 51.6
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 1.7e-09 65.9 41 63.4
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 2.2e-09 65.5 38 68.4
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.9e-09 65.1 91 40.7
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 3.8e-09 64.7 41 63.4
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 5.0e-09 64.3 62 51.6
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 5.0e-09 64.3 62 53.2
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 6.5e-09 63.9 41 58.5
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 6.5e-09 63.9 41 58.5
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 6.5e-09 63.9 60 53.3
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.5e-09 63.9 75 44.0
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 8.4e-09 63.5 70 44.3
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.1e-08 63.2 72 45.8
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.1e-08 63.2 72 45.8
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.1e-08 63.2 82 39.0
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 1.1e-08 63.2 42 57.1
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.1e-08 63.2 59 50.8
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.4e-08 62.8 88 40.9
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.4e-08 62.8 90 41.1
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-08 62.8 60 50.0
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-08 62.8 60 50.0
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.9e-08 62.4 41 61.0
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.9e-08 62.4 84 40.5
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.9e-08 62.4 74 41.9
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.9e-08 62.4 48 56.2
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 2.5e-08 62.0 71 38.0
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 2.5e-08 62.0 52 53.8
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 3.2e-08 61.6 70 40.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 3.2e-08 61.6 70 40.0
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 3.2e-08 61.6 73 47.9
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.2e-08 61.6 41 61.0
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 4.2e-08 61.2 71 38.0
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 4.2e-08 61.2 41 58.5
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 5.5e-08 60.8 84 39.3
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 5.5e-08 60.8 42 59.5
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 5.5e-08 60.8 85 42.4
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 7.1e-08 60.5 41 58.5
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.3e-08 60.1 40 55.0
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.2e-07 59.7 46 54.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.2e-07 59.7 36 61.1
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.2e-07 59.7 37 59.5
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.6e-07 59.3 46 52.2
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.6e-07 59.3 38 60.5
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.1e-07 58.9 38 65.8
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 2.1e-07 58.9 38 65.8
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.7e-07 58.5 38 63.2
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 2.7e-07 58.5 75 37.3
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.5e-07 58.2 40 52.5
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.5e-07 58.2 38 55.3
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 6.1e-07 57.4 71 36.6
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.0e-06 56.6 40 52.5
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.0e-06 56.6 40 52.5
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.8e-06 55.8 40 52.5
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 2.3e-06 55.5 77 35.1
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.3e-06 55.5 38 52.6
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 2.3e-06 55.5 39 51.3
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 3.0e-06 55.1 78 38.5
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 3.9e-06 54.7 79 39.2
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 5.1e-06 54.3 59 47.5
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 5.1e-06 54.3 80 38.8
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.7e-06 53.9 36 58.3
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 6.7e-06 53.9 76 39.5
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 6.7e-06 53.9 51 49.0
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 8.7e-06 53.5 73 41.1
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 8.7e-06 53.5 42 52.4


User provided reference genes

Program Settings