Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 1.7e-35 152.1 76 100.0
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 8.1e-22 106.7 76 77.6
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 4.0e-21 104.4 86 68.6
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 5.8e-20 100.5 92 65.2
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 1.5e-15 85.9 76 64.5
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 2.5e-15 85.1 76 67.1
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 2.5e-15 85.1 76 67.1
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 5.6e-15 84.0 78 65.4
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 7.3e-15 83.6 79 63.3
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.1e-14 82.0 80 65.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.6e-14 81.3 79 64.6
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 2.4e-13 78.6 79 63.3
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.4e-13 78.6 79 60.8
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.1e-13 78.2 78 62.8
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 4.0e-13 77.8 78 61.5
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 5.2e-13 77.4 79 62.0
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 5.2e-13 77.4 77 63.6
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 5.2e-13 77.4 78 62.8
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 5.2e-13 77.4 78 61.5
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 6.8e-13 77.0 78 61.5
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 78 61.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.2e-12 76.3 78 61.5
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.5e-12 75.9 79 60.8
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.6e-12 75.1 79 53.2
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.6e-12 75.1 78 57.7
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.4e-12 74.7 78 60.3
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 3.4e-12 74.7 76 57.9
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 3.4e-12 74.7 76 59.2
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 3.4e-12 74.7 78 57.7
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.4e-12 74.7 83 56.6
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 4.4e-12 74.3 79 59.5
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 5.8e-12 73.9 77 62.3
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 5.8e-12 73.9 78 59.0
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 7.6e-12 73.6 77 59.7
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 7.6e-12 73.6 78 60.3
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 7.6e-12 73.6 79 54.4
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 9.9e-12 73.2 66 59.1
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.3e-11 72.8 66 54.5
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.3e-11 72.8 66 59.1
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 1.7e-11 72.4 78 59.0
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.7e-11 72.4 66 54.5
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.7e-11 72.4 77 61.0
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.7e-11 72.4 79 57.0
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.2e-11 72.0 76 57.9
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.9e-11 71.6 79 58.2
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.8e-11 71.2 76 57.9
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.8e-11 71.2 68 57.4
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.8e-11 71.2 69 59.4
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 3.8e-11 71.2 80 51.2
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.9e-11 70.9 79 58.2
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 4.9e-11 70.9 70 60.0
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 6.4e-11 70.5 79 59.5
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 6.4e-11 70.5 81 55.6
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 8.4e-11 70.1 66 56.1
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.4e-11 70.1 78 53.8
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 8.4e-11 70.1 76 55.3
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 8.4e-11 70.1 92 51.1
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.1e-10 69.7 66 56.1
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.1e-10 69.7 77 58.4
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-10 69.7 77 58.4
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 1.4e-10 69.3 68 52.9
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.4e-10 69.3 78 56.4
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.4e-10 69.3 66 57.6
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 1.4e-10 69.3 82 50.0
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.9e-10 68.9 69 59.4
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-10 68.9 66 54.5
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.9e-10 68.9 74 52.7
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.4e-10 68.6 81 53.1
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.4e-10 68.6 81 53.1
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.4e-10 68.6 82 53.7
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-10 68.2 68 55.9
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 3.2e-10 68.2 78 55.1
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.2e-10 68.2 76 57.9
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.2e-10 68.2 81 55.6
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.1e-10 67.8 79 57.0
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 7.1e-10 67.0 68 54.4
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-09 66.2 66 54.5
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.2e-09 66.2 66 54.5
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.2e-09 66.2 72 58.3
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 2.1e-09 65.5 79 50.6
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.1e-09 65.5 77 55.8
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 2.7e-09 65.1 76 53.9
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 2.7e-09 65.1 71 52.1
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 3.5e-09 64.7 75 52.0
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 3.5e-09 64.7 80 53.8
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.5e-09 64.7 82 54.9
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 3.5e-09 64.7 82 54.9
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.5e-09 64.7 81 51.9
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 4.6e-09 64.3 69 56.5
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.6e-09 64.3 79 50.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 6.0e-09 63.9 77 49.4
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 7.8e-09 63.5 84 46.4
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.0e-08 63.2 79 49.4
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.0e-08 63.2 82 52.4
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.3e-08 62.8 76 52.6
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.7e-08 62.4 79 51.9
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.7e-08 62.4 83 47.0
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.7e-08 62.4 78 52.6
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.3e-08 62.0 76 51.3
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 2.3e-08 62.0 83 53.0
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 2.3e-08 62.0 81 53.1
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.0e-08 61.6 71 53.5
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.0e-08 61.6 79 49.4
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.0e-08 61.6 73 52.1
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 3.0e-08 61.6 80 47.5
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.9e-08 61.2 79 54.4
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 3.9e-08 61.2 84 42.9
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 3.9e-08 61.2 71 52.1
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 5.1e-08 60.8 77 45.5
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 5.1e-08 60.8 77 51.9
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 5.1e-08 60.8 78 51.3
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 5.1e-08 60.8 83 50.6
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 6.6e-08 60.5 73 47.9
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.6e-08 60.5 88 42.0
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 6.6e-08 60.5 80 47.5
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 8.7e-08 60.1 79 48.1
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 8.7e-08 60.1 72 51.4
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 8.7e-08 60.1 83 51.8
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.1e-07 59.7 71 53.5
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-07 59.7 77 49.4
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.1e-07 59.7 71 52.1
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.1e-07 59.7 84 42.9
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.1e-07 59.7 75 48.0
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.5e-07 59.3 81 45.7
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.5e-07 59.3 77 48.1
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 1.5e-07 59.3 89 43.8
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.9e-07 58.9 71 52.1
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.9e-07 58.9 72 47.2
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.9e-07 58.9 79 46.8
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.9e-07 58.9 77 50.6
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.5e-07 58.5 79 46.8
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.5e-07 58.5 75 50.7
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 3.3e-07 58.2 73 50.7
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.3e-07 58.2 81 48.1
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.3e-07 58.2 74 50.0
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 3.3e-07 58.2 90 41.1
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 4.3e-07 57.8 78 46.2
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.3e-07 57.8 87 46.0
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.3e-07 57.8 75 50.7
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.6e-07 57.4 78 47.4
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 5.6e-07 57.4 83 44.6
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 7.3e-07 57.0 85 44.7
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 7.3e-07 57.0 77 45.5
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.3e-07 57.0 77 46.8
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.2e-06 56.2 85 44.7
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.2e-06 56.2 89 40.4
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 2.1e-06 55.5 79 45.6
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 2.1e-06 55.5 79 45.6
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.1e-06 55.5 85 47.1
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 2.8e-06 55.1 74 47.3
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.8e-06 55.1 83 43.4
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 2.8e-06 55.1 75 45.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.6e-06 54.7 84 46.4
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 3.6e-06 54.7 82 45.1
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.6e-06 54.7 73 49.3
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.2e-06 53.9 83 43.4
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.1e-06 53.5 83 41.0
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 8.1e-06 53.5 78 50.0


User provided reference genes

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