Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015172 Sechium edule HOM05D006470 ORTHO05D007978 9.3e-153 544.3 468 100.0
ClCG07G001200 Citrullus lanatus HOM05D006470 ORTHO05D007978 1.1e-97 361.3 467 75.6
Sed0003902 Sechium edule HOM05D006470 ORTHO05D007978 9.8e-94 348.2 474 79.7
MELO3C012860.2 Cucumis melo HOM05D006470 ORTHO05D007978 1.1e-92 344.7 472 72.0
CsaV3_3G022070 Cucumis sativus L. HOM05D006470 ORTHO05D007978 2.3e-90 337.0 465 78.1
ClCG00G001450 Citrullus lanatus HOM05D006470 ORTHO05D007978 2.4e-76 290.4 199 74.4
Haze_24664 Corylus avellana HOM05D006470 ORTHO05D007978 1.1e-55 221.9 212 55.7
Prupe.8G220100 Prunus persica HOM05D006470 ORTHO05D007978 4.0e-55 219.9 183 59.0
Cfa002452 Carpinus fangiana HOM05D006470 ORTHO05D007978 7.6e-54 215.7 212 54.7
MD10G1180100 Malus domestica HOM05D006470 ORTHO05D007978 1.9e-52 211.1 200 54.0
Potri.005G227600 Populus trichocarpa HOM05D006470 ORTHO05D007978 5.4e-52 209.5 200 53.5
Duzib138G0951 Durio zibethinus HOM05D006470 ORTHO05D007978 4.6e-51 206.5 458 49.1
Gohir.D07G156600 Gossypium hirsutum HOM05D006470 ORTHO05D007978 4.6e-51 206.5 456 45.8
Gorai.001G179700 Gossypium raimondii HOM05D006470 ORTHO05D007978 4.6e-51 206.5 456 46.1
QL09p040137 Quercus lobata HOM05D006470 ORTHO05D007978 4.6e-51 206.5 190 52.1
FAN27G1109 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.0e-50 205.3 199 52.8
Ciclev10020031m.g Citrus clementina HOM05D006470 ORTHO05D007978 3.0e-50 203.8 185 55.1
FvH4_2g21070 Fragaria vesca HOM05D006470 ORTHO05D007978 6.6e-50 202.6 196 52.6
FAN24G3268 Fragaria x ananassa HOM05D006470 ORTHO05D007978 6.6e-50 202.6 196 52.6
Manes.13G036500 Manihot esculenta HOM05D006470 ORTHO05D007978 4.3e-49 199.9 460 49.1
FAN15G1173 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.3e-48 198.4 187 52.4
C01p10920 Brassica napus HOM05D006470 ORTHO05D007978 2.8e-48 197.2 207 50.7
FAN20G2495 Fragaria x ananassa HOM05D006470 ORTHO05D007978 6.2e-48 196.1 188 53.2
Manes.12G034500 Manihot esculenta HOM05D006470 ORTHO05D007978 1.1e-47 195.3 184 52.7
RcHm_v2.0_Chr6g0287531 Rosa chinensis HOM05D006470 ORTHO05D007978 1.1e-47 195.3 195 51.3
Sabra05G0175600 Salix brachista HOM05D006470 ORTHO05D007978 1.1e-47 195.3 178 53.4
CiPaw.03G267400 Carya illinoinensis HOM05D006470 ORTHO05D007978 1.8e-47 194.5 182 54.4
Thecc.01G254400 Theobroma cacao HOM05D006470 ORTHO05D007978 2.4e-47 194.1 435 46.9
TWI12G0101 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 2.4e-47 194.1 184 54.3
Gohir.A07G150300 Gossypium hirsutum HOM05D006470 ORTHO05D007978 3.1e-47 193.7 456 53.9
BcaC09g51655 Brassica carinata HOM05D006470 ORTHO05D007978 5.3e-47 193.0 207 50.2
BolC1t01056H Brassica oleracea HOM05D006470 ORTHO05D007978 5.3e-47 193.0 207 50.2
Duzib133G1499 Durio zibethinus HOM05D006470 ORTHO05D007978 9.0e-47 192.2 459 49.0
BraA01t00881Z Brassica rapa HOM05D006470 ORTHO05D007978 1.5e-46 191.4 201 50.2
Dinv22382 Davidia involucrata HOM05D006470 ORTHO05D007978 1.5e-46 191.4 196 52.0
COL.COLO4_04011 Corchorus olitorius HOM05D006470 ORTHO05D007978 3.4e-46 190.3 423 50.1
Thhalv10027034m.g Eutrema salsugineum HOM05D006470 ORTHO05D007978 3.4e-46 190.3 210 46.7
Aa31LG2G21810 Aethionema arabicum HOM05D006470 ORTHO05D007978 4.5e-46 189.9 189 48.7
A01p09340 Brassica napus HOM05D006470 ORTHO05D007978 7.6e-46 189.1 206 49.5
BcaNung04289 Brassica carinata HOM05D006470 ORTHO05D007978 4.9e-45 186.4 217 47.9
BcaNung04688 Brassica carinata HOM05D006470 ORTHO05D007978 4.9e-45 186.4 217 47.9
BcaNung04689 Brassica carinata HOM05D006470 ORTHO05D007978 4.9e-45 186.4 217 47.9
Cpa.g.sc165.30 Carica papaya HOM05D006470 ORTHO05D007978 1.1e-44 185.3 185 49.2
TWI18G0736 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 1.4e-44 184.9 173 53.8
Sp7g26550 Schrenkiella parvula HOM05D006470 ORTHO05D007978 2.1e-43 181.0 182 50.5
Hma1.2p1_0576F.1_g181850 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 4.6e-43 179.9 200 46.5
Lalb_Chr25g0289891 Lupinus albus HOM05D006470 ORTHO05D007978 6.0e-43 179.5 186 46.2
Carub.0007s1211 Capsella rubella HOM05D006470 ORTHO05D007978 1.0e-42 178.7 159 52.2
SGA_v2.0_scaffold1G00631 Striga asiatica HOM05D006470 ORTHO05D007978 1.0e-42 178.7 198 49.0
THA.LOC104814525 Tarenaya hassleriana HOM05D006470 ORTHO05D007978 1.3e-42 178.3 154 55.8
vmacro02686 Vaccinium macrocarpon HOM05D006470 ORTHO05D007978 1.8e-42 177.9 179 49.2
Actinidia37529 Actinidia chinensis HOM05D006470 ORTHO05D007978 3.0e-42 177.2 182 51.6
SHI26693 Sapria himalayana HOM05D006470 ORTHO05D007978 3.0e-42 177.2 175 49.1
Rhsim13G0037300 Rhododendron simsii HOM05D006470 ORTHO05D007978 1.5e-41 174.9 180 50.6
Migut.D00451 Erythranthe guttata HOM05D006470 ORTHO05D007978 1.9e-41 174.5 213 44.1
HanXRQChr10g0280761 Helianthus annuus HOM05D006470 ORTHO05D007978 7.4e-41 172.6 179 49.7
Lj5g0015356 Lotus japonicus HOM05D006470 ORTHO05D007978 7.4e-41 172.6 201 43.3
CSS0011402 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 1.6e-40 171.4 171 48.5
CSS0034739 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 1.6e-40 171.4 171 48.5
Lsat_1_v5_gn_9_10681 Lactuca sativa HOM05D006470 ORTHO05D007978 1.6e-40 171.4 190 47.9
Medtr1g069695 Medicago truncatula HOM05D006470 ORTHO05D007978 2.1e-40 171.0 193 43.5
Phvul.007G191000 Phaseolus vulgaris HOM05D006470 ORTHO05D007978 2.8e-40 170.6 195 47.7
Ca_09663_v3 Cicer arietinum L. HOM05D006470 ORTHO05D007978 3.7e-40 170.2 181 47.0
Lj2P1147T22 Lonicera japonica HOM05D006470 ORTHO05D007978 6.2e-40 169.5 183 50.3
Glyma.10G038800 Glycine max HOM05D006470 ORTHO05D007978 8.1e-40 169.1 194 44.8
Nitab4.5_0003295g0060 Nicotiana tabacum HOM05D006470 ORTHO05D007978 8.1e-40 169.1 437 46.5
VMungo0720G2572 Vigna mungo HOM05D006470 ORTHO05D007978 8.1e-40 169.1 183 49.7
AT4G28560 Arabidopsis thaliana HOM05D006470 ORTHO05D007978 1.8e-39 167.9 189 45.0
AUR62025485 Chenopodium quinoa HOM05D006470 ORTHO05D007978 2.4e-39 167.5 175 47.4
Nitab4.5_0001945g0030 Nicotiana tabacum HOM05D006470 ORTHO05D007978 2.4e-39 167.5 181 45.9
AL7G23980 Arabidopsis lyrata HOM05D006470 ORTHO05D007978 5.3e-39 166.4 156 48.1
DCAR_012563 Daucus carota HOM05D006470 ORTHO05D007978 1.5e-38 164.9 195 44.1
Cc01_g18070 Coffea canephora HOM05D006470 ORTHO05D007978 2.6e-38 164.1 160 51.9
arahy.Tifrunner.gnm1.ann1.NTND9X Arachis hypogaea HOM05D006470 ORTHO05D007978 3.4e-38 163.7 190 42.1
Lsat_1_v5_gn_5_182700 Lactuca sativa HOM05D006470 ORTHO05D007978 4.5e-38 163.3 160 53.1
PSO210G2696 Papaver somniferum HOM05D006470 ORTHO05D007978 4.5e-38 163.3 184 46.2
CARHR236350 Cardamine hirsuta HOM05D006470 ORTHO05D007978 1.0e-37 162.2 186 41.4
PGSC0003DMG400010325 Solanum tuberosum HOM05D006470 ORTHO05D007978 1.0e-37 162.2 149 51.0
Sopen09g028440 Solanum pennellii HOM05D006470 ORTHO05D007978 1.3e-37 161.8 152 50.0
Solyc09g072630.3 Solanum lycopersicum HOM05D006470 ORTHO05D007978 1.7e-37 161.4 152 50.0
ECA248G1135 Erigeron canadensis HOM05D006470 ORTHO05D007978 6.5e-37 159.5 170 50.0
Psat6g062280 Pisum sativum HOM05D006470 ORTHO05D007978 1.4e-36 158.3 185 42.2
Aqoxy5G00193 Aquilegia oxysepala HOM05D006470 ORTHO05D007978 9.3e-36 155.6 441 50.3
PSO832G0066 Papaver somniferum HOM05D006470 ORTHO05D007978 9.3e-36 155.6 178 46.6
Sc05g0003180 Simmondsia chinensis HOM05D006470 ORTHO05D007978 1.2e-35 155.2 175 48.0
CDE08G1533 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 2.1e-35 154.5 198 44.9
TAR362G1291 Trochodendron aralioides HOM05D006470 ORTHO05D007978 3.5e-35 153.7 180 50.6
CAN.G1251.2 Capsicum annuum HOM05D006470 ORTHO05D007978 6.0e-35 152.9 149 49.0
CAN.G1868.1 Capsicum annuum HOM05D006470 ORTHO05D007978 6.0e-35 152.9 149 49.0
Peaxi162Scf00415g00003 Petunia axillaris HOM05D006470 ORTHO05D007978 1.0e-34 152.1 147 49.7
SalBow4G0507 Salvia bowleyana HOM05D006470 ORTHO05D007978 3.0e-34 150.6 175 45.1
MBI10_g13794_MAGBIO Magnolia biondii HOM05D006470 ORTHO05D007978 6.7e-34 149.4 176 47.7
Psat6g062240 Pisum sativum HOM05D006470 ORTHO05D007978 6.7e-34 149.4 192 41.1
Glyma.13G125201 Glycine max HOM05D006470 ORTHO05D007978 4.5e-30 136.7 161 45.3
HPP92_012855 Vanilla planifolia HOM05D006470 ORTHO05D007978 5.0e-29 133.3 155 43.2
Atru.BG.79.p Acer truncatum HOM05D006470 ORTHO05D007978 4.6e-27 126.7 103 59.2
Psat6g063200 Pisum sativum HOM05D006470 ORTHO05D007978 7.9e-27 125.9 181 36.5
Oeu052037.1 Olea europaea HOM05D006470 ORTHO05D007978 1.0e-26 125.6 151 43.0
ATR0736G105 Amborella trichopoda HOM05D006470 ORTHO05D007978 3.0e-26 124.0 159 37.7
CDE02G3387 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 1.6e-24 118.2 158 41.1
ATR0681G334 Amborella trichopoda HOM05D006470 ORTHO05D007978 3.7e-24 117.1 188 37.2
SEGI_23933 Sequoiadendron giganteum HOM05D006470 ORTHO05D007978 4.8e-24 116.7 170 37.6
Os06g0627500 Oryza sativa ssp. japonica HOM05D006470 ORTHO05D007978 5.3e-23 113.2 166 39.8
Actinidia30147 Actinidia chinensis HOM05D006470 ORTHO05D007978 6.9e-23 112.8 171 43.3
unitig_0.g163 Utricularia gibba HOM05D006470 ORTHO05D007978 6.9e-23 112.8 101 52.5
SMO358G0434 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 2.0e-22 111.3 150 38.0
Hma1.2p1_0273F.1_g109440 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 4.2e-20 103.6 182 37.9
SMO118G0043 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 3.6e-19 100.5 162 36.4
SMO146G0184 Selaginella moellendorffii HOM05D003233 ORTHO05D007978 1.0e-18 99.0 166 33.1
Medtr1g069680 Medicago truncatula HOM05D006470 ORTHO05D007978 1.1e-17 95.5 166 33.1
Medtr1g069665 Medicago truncatula HOM05D006470 ORTHO05D007978 3.3e-17 94.0 143 37.8
Nn3g19710 Nelumbo nucifera HOM05D006470 ORTHO05D007978 1.4e-12 78.6 157 31.2
AUR62008754 Chenopodium quinoa HOM05D006470 ORTHO05D007978 1.8e-10 71.6 79 41.8
ECA246G3925 Erigeron canadensis HOM05D004034 ORTHO05D004210 3.9e-10 70.5 173 28.3
AagrBONN_evm.TU.Sc2ySwM_344.1632 Anthoceros agrestis HOM05D003233 ORTHO05D003694 5.1e-10 70.1 156 33.3
SMO339G0042 Selaginella moellendorffii HOM05D007391 ORTHO05D009446 5.1e-10 70.1 149 34.9
HanXRQChr17g0541271 Helianthus annuus HOM05D004034 ORTHO05D004210 2.0e-09 68.2 196 29.1
Mapoly0066s0046 Marchantia polymorpha HOM05D006470 ORTHO05D007978 2.6e-09 67.8 149 29.5
A06p08520 Brassica napus HOM05D003233 ORTHO05D003694 5.7e-09 66.6 154 31.8
BraA06t24047Z Brassica rapa HOM05D003233 ORTHO05D003694 5.7e-09 66.6 154 31.8
Lsat_1_v5_gn_3_36141 Lactuca sativa HOM05D004034 ORTHO05D004210 3.7e-08 63.9 167 28.1
ATR0724G054 Amborella trichopoda HOM05D007391 ORTHO05D009446 1.1e-07 62.4 142 32.4
SEGI_31210 Sequoiadendron giganteum HOM05D007391 ORTHO05D009446 1.1e-07 62.4 151 30.5
Actinidia15759 Actinidia chinensis HOM05D007391 ORTHO05D009446 1.8e-07 61.6 155 30.3
Medtr1g069675 Medicago truncatula HOM05D006470 ORTHO05D007978 2.4e-07 61.2 85 36.5
Hund25113 Selenicereus undatus HOM05D003233 ORTHO05D003694 3.1e-07 60.8 164 32.3
MELO3C017862.2 Cucumis melo HOM05D007391 ORTHO05D009446 4.1e-07 60.5 125 35.2
CsaV3_4G001720 Cucumis sativus L. HOM05D007391 ORTHO05D009446 4.1e-07 60.5 125 35.2
SHI08938 Sapria himalayana HOM05D007391 ORTHO05D009446 4.1e-07 60.5 149 29.5
Zm00001eb159500 Zea mays HOM05D007391 ORTHO05D009446 4.1e-07 60.5 165 27.9
TWI12G0860 Tripterygium wilfordii HOM05D007391 ORTHO05D009446 7.0e-07 59.7 154 29.9
Gohir.A05G123000 Gossypium hirsutum HOM05D007391 ORTHO05D009446 1.2e-06 58.9 143 29.4
Nitab4.5_0003157g0010 Nicotiana tabacum HOM05D007391 ORTHO05D009446 1.2e-06 58.9 170 25.3
SalBow6G6709 Salvia bowleyana HOM05D007391 ORTHO05D009446 2.0e-06 58.2 125 32.0
arahy.Tifrunner.gnm1.ann1.QFR843 Arachis hypogaea HOM05D004034 ORTHO05D004210 2.6e-06 57.8 164 25.0
Hund05775 Selenicereus undatus HOM05D003233 ORTHO05D003694 2.6e-06 57.8 169 29.0
AT1G68780 Arabidopsis thaliana HOM05D003233 ORTHO05D003694 3.5e-06 57.4 159 32.1
CAN.G12.8 Capsicum annuum HOM05D007391 ORTHO05D009446 3.5e-06 57.4 170 25.3
ClCG00G004450 Citrullus lanatus HOM05D007391 ORTHO05D009446 3.5e-06 57.4 229 27.1
ClCG07G012440 Citrullus lanatus HOM05D007391 ORTHO05D009446 3.5e-06 57.4 229 27.1
Glyma.13G365900 Glycine max HOM05D007391 ORTHO05D009446 3.5e-06 57.4 122 29.5
Prupe.3G087800 Prunus persica HOM05D007391 ORTHO05D009446 3.5e-06 57.4 123 33.3
Dinv38125 Davidia involucrata HOM05D007391 ORTHO05D009446 5.9e-06 56.6 154 27.9
MD17G1142500 Malus domestica HOM05D004034 ORTHO05D004210 5.9e-06 56.6 152 28.3
Nitab4.5_0009497g0020 Nicotiana tabacum HOM05D007391 ORTHO05D009446 5.9e-06 56.6 170 25.3
PGR119G0899 Punica granatum HOM05D003233 ORTHO05D003694 5.9e-06 56.6 157 29.9
Eucgr.G02362 Eucalyptus grandis HOM05D003233 ORTHO05D003694 7.7e-06 56.2 187 29.9
PGR031G3861 Punica granatum HOM05D007391 ORTHO05D009446 7.7e-06 56.2 135 30.4


User provided reference genes

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