Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 0.0e+00 1226.1 609 100.0
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 0.0e+00 1095.1 597 91.0
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 3.9e-308 1060.8 600 89.2
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 2.2e-287 991.9 597 85.3
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.4e-254 882.9 622 73.0
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 3.9e-252 874.8 614 73.0
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 7.2e-246 854.0 614 71.8
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 1.6e-245 852.8 617 70.8
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 1.6e-245 852.8 611 71.0
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 8.2e-242 840.5 630 68.6
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 3.4e-240 835.1 622 69.1
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 5.9e-240 834.3 661 66.4
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.3e-239 833.2 620 68.4
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.9e-238 829.3 608 70.1
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.1e-237 825.9 614 70.2
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 1.0e-236 823.5 624 67.0
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 1.5e-235 819.7 614 69.7
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.0e-235 819.3 614 69.5
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 2.5e-235 818.9 608 68.4
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 2.0e-232 809.3 611 68.1
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 2.6e-232 808.9 612 67.0
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 1.3e-231 806.6 603 68.0
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 1.7e-231 806.2 617 66.1
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 8.5e-231 803.9 645 65.0
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 3.6e-229 798.5 607 67.5
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 3.9e-228 795.0 598 68.1
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 1.1e-227 793.5 611 67.1
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 1.5e-227 793.1 609 67.7
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 8.2e-226 787.3 626 66.1
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 3.6e-221 771.9 624 62.7
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 4.8e-218 761.5 621 64.1
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.4e-217 760.0 594 66.0
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 3.5e-216 755.4 614 63.0
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.0e-212 743.8 679 60.7
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.4e-212 743.4 600 63.0
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.5e-211 740.0 698 58.7
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 2.0e-211 739.6 611 62.5
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 2.9e-207 725.7 627 60.3
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 2.9e-207 725.7 602 63.5
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 3.2e-206 722.2 643 58.6
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 2.9e-199 699.1 618 61.0
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 2.9e-199 699.1 502 70.9
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 3.6e-197 692.2 616 61.0
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 2.6e-195 686.0 638 59.6
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.6e-192 676.8 638 58.3
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 4.0e-188 662.1 598 58.9
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 9.8e-187 657.5 527 64.9
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 7.0e-185 651.4 508 65.4
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.5e-184 649.0 528 64.4
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-183 647.5 618 58.3
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 6.6e-183 644.8 545 62.4
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 7.5e-179 631.3 645 56.0
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 7.5e-179 631.3 645 56.0
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.2e-176 624.0 624 55.8
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 6.6e-175 618.2 509 63.9
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 2.2e-170 603.2 616 54.4
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 1.6e-168 597.0 615 50.2
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.3e-167 594.0 666 51.5
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 2.5e-166 589.7 442 71.9
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 3.6e-165 585.9 508 62.8
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 6.2e-165 585.1 447 68.5
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 1.2e-163 580.9 659 52.8
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.9e-154 549.7 461 63.6
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.0e-152 542.0 461 63.1
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 2.8e-149 533.1 416 68.5
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 4.2e-145 519.2 298 83.6
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 2.1e-144 516.9 540 55.0
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 2.3e-143 513.5 440 64.3
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 4.3e-142 509.2 453 61.6
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 5.6e-142 508.8 382 69.4
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 7.4e-142 508.4 417 65.0
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.2e-139 501.1 375 68.8
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 7.6e-139 498.4 503 57.5
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 2.2e-138 496.9 417 62.4
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 3.8e-138 496.1 378 67.7
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 1.3e-135 487.6 417 64.3
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 8.7e-135 485.0 290 79.3
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.2e-128 464.5 441 56.5
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.1e-124 451.4 622 42.8
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 4.5e-115 419.5 247 81.8
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 8.5e-114 415.2 597 41.9
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 4.2e-113 412.9 596 40.4
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 2.5e-81 307.4 286 59.8
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.7e-77 293.5 287 60.3
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.7e-77 293.5 222 68.5
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 3.9e-74 283.5 337 46.9
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 2.1e-72 277.7 173 74.6
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 1.4e-71 275.0 173 72.8
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 2.3e-71 274.2 173 71.7
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.2e-70 271.9 156 85.3
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 5.4e-68 263.1 322 46.9
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.6e-64 251.5 184 64.7
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.7e-61 241.5 593 31.2
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.7e-61 241.5 179 63.1
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 5.4e-60 236.5 138 79.7
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 9.2e-60 235.7 173 63.6
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.6e-59 235.0 178 64.0
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 4.6e-59 233.4 173 61.8
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 7.8e-59 232.6 175 65.1
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 1.3e-58 231.9 173 62.4
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.7e-58 231.5 173 61.8
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 5.1e-58 229.9 173 60.7
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 1.2e-56 225.3 132 81.1
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 4.7e-48 196.8 117 80.3
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.8e-47 194.9 239 49.4
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 1.8e-47 194.9 102 85.3
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 1.2e-46 192.2 173 56.6
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 1.5e-46 191.8 100 86.0
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 9.9e-46 189.1 133 69.9
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 1.3e-45 188.7 133 69.9
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 2.9e-45 187.6 173 53.2
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 1.1e-44 185.7 130 66.9
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 4.3e-41 173.7 130 65.4
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 2.9e-37 161.0 747 24.5
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.2e-36 157.5 90 83.3
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 3.5e-35 154.1 113 71.7
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.1e-31 142.5 129 51.2
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 2.6e-30 137.9 200 46.5
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 5.1e-26 123.6 198 32.8
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 2.9e-21 107.8 85 60.0
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 5.1e-18 97.1 58 79.3
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 4.1e-15 87.4 56 69.6
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.5e-14 85.5 57 61.4
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 1.9e-12 78.6 60 65.0
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 3.9e-10 70.9 69 50.7
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 5.7e-09 67.0 41 75.6
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 1.3e-08 65.9 88 43.2
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 3.7e-08 64.3 44 70.5
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 4.8e-08 63.9 44 72.7
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 4.8e-08 63.9 186 31.7
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 4.8e-08 63.9 88 42.0
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 6.3e-08 63.5 88 42.0
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 6.3e-08 63.5 57 56.1
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 1.1e-07 62.8 246 24.0
Lsat_1_v5_gn_4_89941 Lactuca sativa HOM05D000467 ORTHO05D000379 1.4e-07 62.4 119 26.9
CSS0035081 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.1e-07 61.2 47 68.1
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.2e-06 59.3 229 23.1
CSS0038194 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.2e-06 59.3 47 66.0
Phvul.008G125400 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 1.2e-06 59.3 281 20.6
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 1.5e-06 58.9 228 25.9
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.6e-06 58.2 38 76.3
Glyma.18G171100 Glycine max HOM05D000836 ORTHO05D000709 2.6e-06 58.2 273 20.5
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 3.4e-06 57.8 224 23.7
CSS0045499 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.5e-06 57.4 47 63.8
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 4.5e-06 57.4 239 24.3


User provided reference genes

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