Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 1.0e-90 336.7 166 100.0
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 1.1e-50 203.8 187 62.0
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 2.4e-50 202.6 186 62.4
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 4.0e-50 201.8 185 63.2
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 3.8e-48 195.3 184 62.5
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 1.3e-45 186.8 182 59.9
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 3.9e-45 185.3 186 59.7
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.5e-44 183.3 186 58.1
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 4.3e-44 181.8 184 57.6
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 4.3e-44 181.8 192 57.8
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 8.1e-43 177.6 192 55.2
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.1e-42 175.6 181 54.7
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 5.3e-42 174.9 187 57.8
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 5.3e-42 174.9 187 55.6
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 6.9e-42 174.5 194 54.6
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 6.9e-42 174.5 185 57.8
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 1.2e-41 173.7 193 57.5
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 2.6e-41 172.6 194 51.5
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 2.6e-41 172.6 191 55.0
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.4e-41 172.2 187 56.7
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 3.4e-41 172.2 195 51.3
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.3e-40 170.2 186 57.5
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 1.3e-40 170.2 182 54.9
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 2.2e-40 169.5 185 51.9
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 2.2e-40 169.5 185 51.9
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 2.9e-40 169.1 195 54.4
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 3.8e-40 168.7 186 55.4
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 3.8e-40 168.7 185 56.2
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 8.4e-40 167.5 188 55.9
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.1e-39 167.2 186 53.2
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 1.9e-39 166.4 193 54.4
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 4.2e-39 165.2 193 53.4
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 4.2e-39 165.2 180 51.7
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 5.4e-39 164.9 185 53.5
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.4e-39 164.9 185 53.5
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.4e-39 164.9 185 53.5
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 7.1e-39 164.5 192 53.1
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 6.0e-38 161.4 175 53.1
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.8e-37 159.8 189 52.4
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.3e-37 159.5 196 52.0
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.1e-36 157.1 176 54.0
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 2.5e-36 156.0 192 54.2
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 3.3e-36 155.6 193 54.9
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 4.3e-36 155.2 190 48.4
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 5.6e-36 154.8 173 51.4
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.6e-35 153.3 173 50.9
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.6e-35 153.3 173 50.9
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.8e-35 152.5 185 50.8
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 6.2e-35 151.4 200 49.0
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.1e-34 150.6 181 48.6
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.4e-34 150.2 193 48.7
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.1e-34 149.1 186 49.5
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 5.3e-34 148.3 182 50.5
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 6.9e-34 147.9 164 54.3
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.5e-33 146.7 191 48.7
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 2.6e-33 146.0 183 47.5
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 5.8e-33 144.8 194 47.4
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 7.6e-33 144.4 114 66.7
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 7.6e-33 144.4 187 50.3
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.3e-32 143.7 189 47.6
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.3e-32 143.7 180 48.3
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.7e-32 143.3 182 50.0
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.7e-32 143.3 195 49.2
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.9e-32 142.5 200 48.5
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.9e-32 141.7 191 48.2
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 6.5e-32 141.4 187 47.1
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.1e-31 140.6 191 48.2
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.9e-31 139.8 198 49.0
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.5e-31 139.4 187 49.2
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 3.2e-31 139.0 188 47.9
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 4.2e-31 138.7 171 51.5
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.6e-30 136.7 187 47.1
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.5e-30 135.6 202 45.0
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 4.6e-30 135.2 180 50.0
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 7.9e-30 134.4 164 50.6
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.0e-29 134.0 186 46.8
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.0e-29 134.0 206 46.6
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.8e-29 133.3 173 49.7
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.3e-29 132.9 183 46.4
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.3e-29 132.9 183 46.4
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.3e-29 132.9 184 48.4
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.0e-29 132.5 184 48.4
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 8.7e-29 131.0 184 48.4
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 8.7e-29 131.0 168 50.6
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 8.7e-29 131.0 185 45.9
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.1e-28 130.6 179 45.3
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.5e-28 130.2 165 45.5
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 2.5e-28 129.4 186 45.2
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 7.4e-28 127.9 195 47.2
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 9.6e-28 127.5 210 41.9
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 9.6e-28 127.5 186 46.2
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 9.6e-28 127.5 187 44.9
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.3e-27 127.1 180 45.6
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.6e-27 126.7 190 46.3
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 3.7e-27 125.6 174 50.0
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 4.8e-27 125.2 179 45.8
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 6.2e-27 124.8 190 47.9
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 6.2e-27 124.8 188 47.3
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 8.2e-27 124.4 171 46.8
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.1e-26 122.5 183 43.7
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 6.9e-26 121.3 182 46.2
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 9.0e-26 120.9 202 39.6
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 9.0e-26 120.9 191 42.9
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.2e-25 120.6 197 43.7
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.5e-25 120.2 197 44.2
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 1.5e-25 120.2 210 44.3
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 1.5e-25 120.2 210 44.3
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 2.0e-25 119.8 169 42.6
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 2.0e-25 119.8 194 43.8
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 2.6e-25 119.4 175 45.1
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 2.6e-25 119.4 178 43.3
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 3.4e-25 119.0 167 49.7
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 3.4e-25 119.0 167 49.7
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 3.4e-25 119.0 167 49.7
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 4.5e-25 118.6 167 48.5
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 5.8e-25 118.2 167 47.9
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 7.6e-25 117.9 193 43.5
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 1.7e-24 116.7 200 44.0
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 1.7e-24 116.7 194 42.3
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 2.9e-24 115.9 216 44.0
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 5.0e-24 115.2 187 42.2
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 1.4e-23 113.6 168 46.4
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 9.3e-23 110.9 213 42.3
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 1.2e-22 110.5 190 43.2
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 1.2e-22 110.5 190 43.2
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.6e-22 110.2 172 45.9
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 2.1e-22 109.8 194 42.3
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 2.1e-22 109.8 194 42.3
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 1.1e-20 104.0 189 38.6
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.1e-20 104.0 106 54.7
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.9e-20 103.2 178 38.8
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 6.3e-19 98.2 193 36.3
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 1.3e-16 90.5 176 39.2
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.4e-15 87.0 173 38.2
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 1.2e-14 84.0 55 70.9
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 1.6e-14 83.6 76 63.2
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 6.7e-13 78.2 149 40.9
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.1e-12 77.4 44 81.8
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 1.7e-11 73.6 180 33.9
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 3.7e-11 72.4 179 30.7
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 6.9e-10 68.2 93 50.5
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 9.1e-10 67.8 218 30.3
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 2.9e-08 62.8 177 30.5
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 5.0e-08 62.0 79 49.4
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.1e-07 60.8 156 34.0
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 5.5e-07 58.5 130 34.6
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 2.1e-06 56.6 157 28.7
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.7e-06 56.2 161 31.1
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 7.9e-06 54.7 155 31.0


User provided reference genes

Program Settings