Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.5e-295 1018.8 542 100.0
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.1e-184 649.0 598 62.9
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.5e-173 612.8 575 62.1
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.3e-170 602.4 570 59.3
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 6.3e-76 289.3 612 35.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 8.2e-76 288.9 627 34.8
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.0e-73 282.0 637 34.9
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.7e-73 281.2 614 34.0
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 5.5e-72 276.2 606 36.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.8e-70 271.2 597 33.8
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 3.3e-69 266.9 631 32.5
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.8e-67 261.2 616 32.5
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.4e-67 260.8 660 32.3
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 9.1e-67 258.8 616 33.4
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 4.5e-66 256.5 626 32.7
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.2e-65 254.2 619 35.1
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 8.5e-65 252.3 614 32.6
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-64 251.9 650 35.5
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.9e-64 251.1 643 35.6
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 9.4e-64 248.8 623 33.2
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.2e-63 248.4 690 31.6
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.4e-62 245.0 617 31.6
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.3e-62 244.2 649 31.9
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 5.1e-62 243.0 657 31.7
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 6.7e-62 242.7 660 29.8
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.7e-62 242.7 650 35.2
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 6.7e-62 242.7 648 31.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 3.3e-61 240.4 650 35.1
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.7e-60 238.0 618 33.3
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 2.2e-60 237.7 635 32.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.1e-59 235.3 523 34.6
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 6.9e-59 232.6 619 31.3
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.2e-58 231.9 659 34.6
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 2.6e-58 230.7 521 33.6
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.6e-58 230.7 653 30.5
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.0e-57 228.8 631 30.1
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.7e-57 228.0 548 31.9
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 6.5e-57 226.1 613 30.3
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 8.5e-57 225.7 619 32.8
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 5.5e-56 223.0 648 30.2
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.6e-55 220.3 650 33.5
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 6.1e-55 219.5 613 30.5
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.0e-54 218.8 645 30.7
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.8e-54 218.0 635 31.2
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.3e-54 217.6 604 31.6
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 3.9e-54 216.9 695 29.2
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 8.8e-54 215.7 516 31.4
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 8.8e-54 215.7 516 31.4
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.6e-53 214.2 525 32.4
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 3.3e-53 213.8 618 30.6
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 3.3e-53 213.8 628 30.4
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.4e-53 213.4 573 29.7
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 9.7e-53 212.2 641 30.0
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.7e-52 211.5 608 31.1
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.1e-51 208.8 616 31.3
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.4e-51 208.4 594 30.0
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.8e-51 208.0 486 31.1
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 2.4e-51 207.6 649 29.6
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 3.1e-51 207.2 599 31.1
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 7.0e-51 206.1 594 29.6
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.6e-50 204.9 691 28.4
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.6e-50 204.1 602 30.4
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 7.7e-50 202.6 676 29.6
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 7.7e-50 202.6 621 31.4
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.3e-49 201.8 520 31.5
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.3e-49 201.8 520 31.5
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.3e-49 201.8 674 29.1
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.9e-49 200.7 519 30.8
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 6.5e-49 199.5 518 31.7
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.1e-48 198.7 609 28.4
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.5e-48 198.4 621 29.3
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.9e-48 198.0 628 28.8
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 3.2e-48 197.2 597 30.3
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 4.2e-48 196.8 624 28.8
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 7.2e-48 196.1 613 29.0
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.4e-48 195.7 694 26.4
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.8e-46 191.4 594 29.6
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 3.0e-46 190.7 626 30.5
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 5.2e-46 189.9 691 27.4
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 6.7e-46 189.5 665 29.0
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 6.7e-46 189.5 717 28.0
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.8e-46 189.1 594 30.3
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 6.3e-44 183.0 673 26.9
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 6.3e-44 183.0 604 28.1
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 6.3e-44 183.0 557 30.2
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 8.2e-44 182.6 552 30.1
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.4e-43 181.0 668 28.4
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 7.0e-43 179.5 611 28.2
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.6e-42 178.3 667 26.7
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 7.7e-42 176.0 545 29.0
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.0e-41 175.6 555 27.9
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.7e-41 174.9 732 26.6
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.1e-40 172.2 524 29.0
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.5e-40 171.8 525 29.0
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.5e-40 171.0 486 29.8
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.2e-39 168.7 713 25.8
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.7e-39 167.5 299 37.1
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.4e-38 165.2 610 29.0
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.4e-38 165.2 467 31.5
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.4e-38 165.2 536 28.9
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.8e-38 164.9 767 24.9
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.3e-38 164.5 503 31.8
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 4.0e-38 163.7 287 37.6
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.5e-37 161.8 544 29.8
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.5e-37 161.8 601 27.3
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.6e-37 161.0 716 26.8
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 7.5e-37 159.5 644 28.4
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.7e-36 157.1 572 28.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 4.8e-36 156.8 638 26.0
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.5e-32 145.2 612 27.3
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 2.1e-31 141.4 586 27.0
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.6e-31 140.6 683 25.2
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.0e-31 139.4 530 28.7
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 6.8e-30 136.3 614 25.1
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.4e-29 134.0 820 22.3
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.1e-27 129.0 743 22.9
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 9.2e-27 125.9 677 24.5
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 9.2e-27 125.9 245 33.9
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.9e-25 120.9 808 21.2
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 5.0e-25 120.2 806 21.3
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.5e-24 118.6 283 35.0
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.3e-24 117.5 477 27.5
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.1e-23 113.2 177 43.5
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.2e-22 110.2 152 44.1
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.0e-21 108.2 242 33.1
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 2.6e-21 107.8 197 31.5
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.3e-20 105.5 435 28.0
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 2.2e-20 104.8 258 31.8
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 3.7e-20 104.0 266 32.0
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 4.9e-20 103.6 649 23.7
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.4e-19 101.3 138 42.0
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.1e-19 100.5 274 35.0
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 5.4e-19 100.1 344 29.4
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.6e-18 98.6 265 33.2
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 6.6e-17 93.2 269 30.9
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 6.6e-17 93.2 181 35.4
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.1e-16 92.4 128 41.4
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 1.1e-16 92.4 147 37.4
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 9.5e-16 89.4 265 32.8
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 3.6e-15 87.4 400 27.2
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 6.2e-15 86.7 251 30.7
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 8.0e-15 86.3 308 29.5
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.1e-14 85.9 251 29.9
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.8e-14 85.1 259 28.6
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.2e-13 82.4 79 45.6
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.0e-13 81.6 301 30.2
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.7e-12 78.6 210 28.6
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.9e-12 77.8 83 42.2
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.2e-11 72.8 86 45.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.6e-10 72.0 65 55.4
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.6e-10 72.0 86 45.3
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 6.6e-09 66.6 108 36.1
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 6.6e-09 66.6 58 48.3
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.1e-08 65.9 108 35.2
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.5e-08 64.7 183 28.4
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 4.3e-08 63.9 60 48.3
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 2.8e-07 61.2 86 36.0
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.4e-06 58.9 85 47.1


User provided reference genes

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