Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 3.4e-186 654.8 325 100.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 6.5e-161 570.9 325 84.9
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 4.3e-157 558.1 358 77.9
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.5e-146 523.1 325 80.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 1.7e-113 413.3 326 63.5
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.7e-111 406.0 323 62.8
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 3.0e-110 402.5 329 62.0
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 3.0e-110 402.5 321 63.9
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 4.9e-108 395.2 329 63.2
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.8e-107 393.3 327 61.8
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 2.4e-107 392.9 323 62.2
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 3.1e-107 392.5 361 57.1
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.1e-107 392.5 322 64.0
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 9.2e-107 391.0 352 58.8
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.7e-106 389.4 325 60.0
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 2.7e-106 389.4 292 65.1
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.3e-104 382.1 284 64.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 4.3e-104 382.1 335 59.4
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 9.5e-104 380.9 315 61.3
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.1e-103 379.8 315 60.0
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 2.8e-103 379.4 323 61.0
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 4.7e-103 378.6 326 59.8
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 8.0e-103 377.9 326 58.9
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.8e-102 376.7 320 59.7
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 2.3e-102 376.3 323 59.8
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.3e-102 376.3 315 60.6
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.3e-102 376.3 315 60.6
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 2.3e-102 376.3 321 57.6
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.0e-102 375.9 329 59.3
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 6.8e-102 374.8 385 52.2
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 8.9e-102 374.4 319 58.9
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.2e-101 374.0 313 59.4
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-101 374.0 318 59.1
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.2e-101 374.0 284 63.7
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.5e-101 373.6 322 59.3
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 2.0e-101 373.2 329 58.1
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.6e-101 372.9 284 63.7
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.4e-101 372.1 281 62.6
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 4.4e-101 372.1 281 62.6
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 7.5e-101 371.3 322 59.3
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 2.2e-100 369.8 323 57.9
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 4.9e-100 368.6 339 57.8
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.4e-99 367.1 278 62.6
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.8e-99 366.7 329 55.6
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.8e-99 366.7 337 57.3
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.8e-99 366.7 329 56.5
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 2.4e-99 366.3 291 62.9
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.4e-99 366.3 337 57.0
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 4.1e-99 365.5 324 58.6
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 7.0e-99 364.8 325 56.6
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 7.0e-99 364.8 322 57.8
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 9.2e-99 364.4 323 58.2
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.2e-98 364.0 293 60.4
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.6e-98 363.6 328 57.0
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.6e-98 363.6 321 57.9
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 2.0e-98 363.2 326 58.9
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 5.9e-98 361.7 300 63.3
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 7.8e-98 361.3 248 67.7
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 1.7e-97 360.1 326 58.3
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 1.7e-97 360.1 326 58.3
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.7e-97 360.1 296 59.8
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 3.0e-97 359.4 285 60.4
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 3.9e-97 359.0 319 57.7
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 8.6e-97 357.8 325 56.6
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.5e-96 357.1 321 57.6
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 5.6e-96 355.1 327 55.0
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 9.5e-96 354.4 319 57.7
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.6e-95 353.6 335 56.4
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 2.1e-95 353.2 301 59.5
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.1e-95 353.2 278 61.5
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.8e-95 352.8 304 61.8
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.8e-95 352.8 325 56.9
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 4.7e-95 352.1 320 57.2
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.7e-95 352.1 254 66.5
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 6.2e-95 351.7 321 55.5
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.0e-94 350.9 300 60.3
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.4e-94 350.5 331 57.7
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.8e-94 350.1 331 57.4
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.3e-94 349.7 320 57.2
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.3e-94 349.7 319 55.8
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.1e-94 349.4 308 60.1
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 6.8e-94 348.2 279 62.4
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 8.9e-94 347.8 322 56.8
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 8.9e-94 347.8 325 54.8
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 1.2e-93 347.4 235 68.5
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.6e-93 346.3 250 66.0
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 4.4e-93 345.5 275 60.0
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 5.8e-93 345.1 250 66.0
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 5.8e-93 345.1 286 58.0
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.3e-92 344.0 250 66.0
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.7e-92 343.6 322 55.9
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.2e-92 343.2 285 57.2
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.9e-92 342.8 289 58.8
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 3.7e-92 342.4 303 55.1
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 4.9e-92 342.0 322 55.6
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 8.3e-92 341.3 250 62.8
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 8.3e-92 341.3 231 69.3
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 9.2e-91 337.8 387 48.8
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.2e-90 337.4 368 49.5
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.0e-90 336.7 333 54.1
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 2.7e-90 336.3 284 60.6
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 4.6e-90 335.5 323 54.8
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 6.0e-90 335.1 352 50.0
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 5.0e-89 332.0 206 75.7
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 5.0e-89 332.0 277 58.1
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 9.5e-88 327.8 289 59.5
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.2e-87 327.4 249 61.8
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 8.1e-87 324.7 347 50.1
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.0e-85 320.1 264 59.1
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 8.3e-84 314.7 281 56.9
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 3.2e-83 312.8 352 47.2
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 9.5e-80 301.2 330 50.0
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.4e-78 297.4 326 47.2
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 8.9e-78 294.7 226 62.4
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.6e-74 283.9 198 69.2
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 3.0e-73 279.6 279 49.5
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.5e-72 277.3 233 57.9
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 3.3e-72 276.2 188 66.5
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.8e-70 270.4 238 55.0
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.2e-69 267.7 249 52.6
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.1e-64 251.1 236 52.1
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.1e-64 251.1 214 57.5
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.3e-63 247.7 271 46.5
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 5.3e-62 242.3 235 48.5
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 5.3e-62 242.3 235 48.5
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 2.6e-61 240.0 198 57.6
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.3e-60 237.7 211 55.0
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 1.6e-58 230.7 213 56.3
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 5.6e-56 222.2 194 59.3
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 4.8e-55 219.2 303 36.3
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 4.5e-53 212.6 159 62.3
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.0e-49 201.4 144 64.6
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.0e-49 201.4 161 62.1
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.6e-48 194.9 214 48.6
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 7.6e-45 185.3 237 39.2
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.4e-43 181.0 193 48.2
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 4.2e-43 179.5 165 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 5.7e-40 169.1 147 56.5
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.1e-39 167.2 169 58.6
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.1e-38 164.9 116 66.4
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 3.4e-37 159.8 288 35.8
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 4.6e-34 149.4 193 40.4
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 1.9e-32 144.1 138 53.6
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.4e-29 133.3 103 56.3
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 7.9e-26 122.1 137 53.3
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 9.1e-22 108.6 170 44.7
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.3e-20 104.8 105 47.6
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.4e-19 101.3 75 57.3
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.2e-19 99.8 143 40.6
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.3e-15 88.2 131 46.6
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.3e-15 88.2 76 56.6
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.8e-15 87.0 91 48.4
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 2.4e-14 84.0 79 59.5
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 3.1e-14 83.6 73 56.2
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 2.7e-10 70.5 39 76.9
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 4.4e-08 63.2 219 27.4
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.4e-06 58.2 34 76.5


User provided reference genes

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