Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 4.6e-70 267.7 128 100.0
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 2.6e-65 251.9 128 91.4
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 2.6e-65 251.9 128 91.4
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.1e-63 246.5 125 92.0
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.2e-63 245.0 125 88.8
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 5.4e-63 244.2 125 89.6
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 9.3e-63 243.4 125 90.4
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 2.1e-62 242.3 125 88.8
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.7e-62 241.9 143 82.5
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 2.7e-62 241.9 125 87.2
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 91.3
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 90.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 7.9e-62 240.4 125 89.6
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 7.9e-62 240.4 125 90.4
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.3e-61 239.6 125 88.0
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 1.8e-61 239.2 125 88.0
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.8e-61 239.2 125 87.2
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.8e-61 239.2 125 88.8
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.8e-61 239.2 125 88.8
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.3e-61 238.8 125 87.2
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.3e-61 238.8 125 88.8
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 6.7e-61 237.3 125 88.8
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 6.7e-61 237.3 125 86.4
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 6.7e-61 237.3 125 86.4
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.5e-60 236.1 126 85.7
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 2.5e-60 235.3 125 86.4
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 3.3e-60 235.0 125 86.4
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 3.3e-60 235.0 125 86.4
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 4.3e-60 234.6 125 88.0
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 4.3e-60 234.6 125 88.0
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.3e-60 234.6 125 85.6
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 5.6e-60 234.2 125 87.2
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 5.6e-60 234.2 125 87.2
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 7.4e-60 233.8 124 86.3
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 7.4e-60 233.8 125 87.2
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 7.4e-60 233.8 125 86.4
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 7.4e-60 233.8 125 87.2
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.4e-60 233.8 125 85.6
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 7.4e-60 233.8 125 85.6
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 7.4e-60 233.8 127 84.3
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 9.6e-60 233.4 125 85.6
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.3e-59 233.0 125 84.8
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.3e-59 233.0 126 84.9
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.3e-59 233.0 125 84.8
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.1e-59 232.3 125 85.6
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 3.7e-59 231.5 125 85.6
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.8e-59 231.1 124 85.5
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 6.2e-59 230.7 125 84.0
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 8.1e-59 230.3 125 84.8
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 1.4e-58 229.6 125 83.2
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 1.4e-58 229.6 125 84.0
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.4e-58 229.6 124 84.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 1.4e-58 229.6 125 84.8
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 84.8
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 84.8
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 84.8
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 84.9
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 4.0e-58 228.0 125 83.2
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 4.0e-58 228.0 125 83.2
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 5.3e-58 227.6 125 85.6
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 5.3e-58 227.6 125 84.0
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.3e-58 227.6 125 84.0
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 6.9e-58 227.3 125 84.8
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 6.9e-58 227.3 125 84.0
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 9.0e-58 226.9 125 84.0
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.2e-57 226.5 125 84.0
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 1.2e-57 226.5 125 83.2
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.5e-57 226.1 125 83.2
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 2.0e-57 225.7 125 82.4
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 2.0e-57 225.7 125 84.0
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 2.0e-57 225.7 125 84.0
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 2.0e-57 225.7 125 82.4
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.6e-57 225.3 125 84.0
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.6e-57 225.3 125 83.2
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.6e-57 225.3 125 84.0
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.6e-57 225.3 125 83.2
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 3.4e-57 224.9 125 83.2
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 3.4e-57 224.9 125 83.2
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 4.5e-57 224.6 125 83.2
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 4.5e-57 224.6 125 82.4
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 5.8e-57 224.2 125 82.4
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 5.8e-57 224.2 125 82.4
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 5.8e-57 224.2 125 82.4
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 1.3e-56 223.0 125 81.6
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 1.3e-56 223.0 125 81.6
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.3e-56 223.0 113 88.5
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.7e-56 222.6 125 82.4
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 83.3
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 3.8e-56 221.5 125 81.6
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 8.4e-56 220.3 125 81.6
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.9e-55 219.2 129 81.4
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 2.5e-55 218.8 125 80.8
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.5e-55 218.8 125 80.8
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 3.2e-55 218.4 125 80.0
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 3.2e-55 218.4 125 82.4
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 3.2e-55 218.4 125 80.8
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 3.2e-55 218.4 125 83.2
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 4.2e-55 218.0 118 86.4
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 9.3e-55 216.9 125 80.8
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 9.3e-55 216.9 126 81.7
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.1e-54 215.7 125 79.2
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 7.9e-54 213.8 125 80.8
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.9e-52 209.1 107 90.7
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 9.6e-52 206.8 124 77.4
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.6e-51 206.1 125 77.6
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 8.2e-51 203.8 112 83.9
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.4e-50 203.0 125 72.8
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.1e-50 201.8 107 86.9
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 6.9e-50 200.7 125 74.4
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 9.0e-50 200.3 107 86.0
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.0e-49 199.1 107 83.2
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 4.5e-49 198.0 107 86.9
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 5.8e-49 197.6 107 85.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.0e-48 196.8 95 90.5
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.3e-48 196.4 107 84.1
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 1.3e-48 196.4 107 85.0
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.7e-48 196.1 107 81.3
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 2.9e-48 195.3 104 86.5
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 3.8e-48 194.9 107 84.1
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 4.2e-47 191.4 93 90.3
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 4.2e-47 191.4 125 69.6
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 7.1e-47 190.7 93 89.2
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 9.3e-47 190.3 107 81.3
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 7.9e-46 187.2 112 79.5
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 2.3e-45 185.7 107 82.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 8.7e-45 183.7 112 77.7
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 4.8e-43 177.9 112 75.0
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 6.3e-43 177.6 139 64.0
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.9e-39 166.0 124 65.3
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 4.2e-39 164.9 124 61.3
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.6e-38 161.8 125 64.8
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 6.7e-37 157.5 141 57.4
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 7.4e-36 154.1 125 63.2
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 7.4e-36 154.1 105 64.8
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 7.4e-36 154.1 75 88.0
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 4.2e-31 138.3 103 60.2
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.6e-30 136.3 80 78.8
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.1e-28 130.2 75 81.3
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.5e-28 129.8 79 73.4
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.4e-26 122.5 86 67.4
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 3.1e-26 122.1 125 52.0
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 9.1e-26 120.6 66 81.8
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.5e-25 119.8 86 65.1
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 4.5e-25 118.2 66 78.8
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.0e-24 117.1 90 56.7
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 1.7e-24 116.3 63 82.5
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.1e-23 113.6 88 65.9
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 2.7e-22 109.0 75 65.3
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 2.4e-18 95.9 97 51.5
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 1.2e-17 93.6 70 65.7
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.6e-17 93.2 72 63.9
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 1.7e-16 89.7 99 47.5
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.7e-16 89.7 103 45.6
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 9.4e-15 84.0 43 86.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.2e-08 62.8 45 68.9
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 1.5e-07 60.1 42 71.4
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 2.5e-07 59.3 95 37.9


User provided reference genes

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