Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 1.4e-148 529.6 267 100.0
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 8.3e-130 467.2 267 86.9
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 3.5e-128 461.8 267 86.5
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 7.2e-126 454.1 267 85.0
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 3.7e-98 362.1 269 66.2
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 7.1e-97 357.8 244 70.9
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 1.2e-96 357.1 273 64.5
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 1.7e-95 353.2 244 71.3
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 8.6e-95 350.9 273 65.2
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 7.3e-94 347.8 259 64.9
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 1.2e-93 347.1 273 62.3
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 8.1e-93 344.4 274 64.2
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 1.4e-92 343.6 270 64.8
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 1.4e-92 343.6 270 64.8
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 8.9e-92 340.9 276 64.1
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 8.9e-92 340.9 274 63.1
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 2.6e-91 339.3 273 62.3
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 5.8e-91 338.2 273 63.0
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 3.7e-90 335.5 269 63.2
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 6.4e-90 334.7 273 61.5
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 1.9e-89 333.2 272 62.1
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 9.2e-89 330.9 274 61.7
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 2.7e-88 329.3 275 61.1
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 1.7e-87 326.6 263 65.0
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 1.7e-87 326.6 272 61.8
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 3.0e-87 325.9 238 66.8
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 5.1e-87 325.1 254 63.8
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 1.1e-86 323.9 273 61.2
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 1.5e-86 323.6 273 61.9
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 4.3e-86 322.0 274 62.4
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 4.3e-86 322.0 273 60.8
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 9.6e-86 320.9 238 65.5
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 1.2e-85 320.5 244 65.2
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 4.7e-85 318.5 238 65.1
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 6.2e-85 318.2 233 67.0
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 8.1e-85 317.8 275 59.3
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 8.1e-85 317.8 238 66.4
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 2.4e-84 316.2 238 66.0
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 2.4e-84 316.2 271 58.3
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 2.4e-84 316.2 238 64.3
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 3.1e-84 315.8 273 59.7
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 2.6e-83 312.8 273 59.3
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 7.6e-83 311.2 249 63.5
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 1.3e-82 310.5 272 57.4
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 2.2e-82 309.7 272 59.2
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 7.1e-81 304.7 276 57.2
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 7.1e-81 304.7 273 58.6
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 1.2e-80 303.9 276 56.9
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 1.6e-80 303.5 276 56.9
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 2.1e-80 303.1 254 59.8
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 2.7e-80 302.8 276 56.5
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 4.6e-80 302.0 273 59.0
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 7.8e-80 301.2 274 59.1
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 1.3e-79 300.4 276 56.9
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 3.0e-79 299.3 273 58.2
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 3.0e-79 299.3 273 58.2
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 3.9e-79 298.9 275 56.7
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 6.6e-79 298.1 273 57.1
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 1.1e-78 297.4 272 55.9
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 1.9e-78 296.6 244 59.8
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 2.5e-78 296.2 276 55.8
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 5.6e-78 295.0 272 56.6
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 5.6e-78 295.0 272 58.8
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 7.3e-78 294.7 280 56.8
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 7.3e-78 294.7 280 56.8
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 2.1e-77 293.1 278 56.5
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 2.1e-77 293.1 278 56.5
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 8.1e-77 291.2 256 59.8
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 2.2e-74 283.1 239 60.3
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 1.4e-73 280.4 269 56.5
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 5.4e-73 278.5 238 62.6
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 7.1e-73 278.1 251 55.4
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 9.3e-73 277.7 218 62.8
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 3.5e-72 275.8 238 61.3
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 6.0e-72 275.0 265 54.0
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 7.9e-72 274.6 274 54.0
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 2.3e-71 273.1 269 56.1
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 4.3e-70 268.9 263 54.4
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 4.3e-70 268.9 264 54.5
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 1.4e-68 263.8 269 53.2
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 3.1e-68 262.7 201 64.7
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 8.4e-66 254.6 279 52.0
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 1.9e-65 253.4 202 62.9
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 1.9e-65 253.4 274 52.6
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 5.5e-65 251.9 279 52.0
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 1.1e-62 244.2 257 51.8
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 1.1e-60 237.7 264 50.0
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 1.3e-58 230.7 242 53.3
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 2.9e-58 229.6 249 52.2
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 3.0e-55 219.5 235 50.2
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 3.0e-55 219.5 235 50.2
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 6.3e-53 211.8 235 46.0
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 4.1e-52 209.1 238 47.5
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 4.1e-52 209.1 245 49.0
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 1.2e-51 207.6 238 45.8
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 3.4e-51 206.1 239 45.6
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 7.6e-51 204.9 247 48.6
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 3.2e-49 199.5 239 46.0
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 5.5e-49 198.7 248 48.0
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 2.7e-48 196.4 247 48.2
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 1.0e-47 194.5 162 61.1
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 2.3e-47 193.4 245 44.5
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 1.5e-43 180.6 238 44.5
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 1.0e-42 177.9 261 42.1
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 1.3e-42 177.6 199 49.2
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 2.2e-42 176.8 199 48.7
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 1.0e-39 167.9 245 39.6
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 5.1e-31 139.0 223 39.0
AL5G13960 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 1.7e-29 134.0 88 69.3
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 6.3e-29 132.1 256 36.3
Os01g0219000 Oryza sativa ssp. japonica HOM05D006853 ORTHO05D008906 2.4e-28 130.2 223 40.8
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 7.7e-27 125.2 279 33.7
Zm00001eb119820 Zea mays HOM05D006853 ORTHO05D008906 2.2e-26 123.6 219 38.8
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 6.7e-23 112.1 119 49.6
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 2.8e-21 106.7 116 50.0
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 1.1e-20 104.8 88 58.0
HanXRQChr12g0364531 Helianthus annuus HOM05D006853 ORTHO05D008906 3.5e-19 99.8 111 53.2
ATR0737G064 Amborella trichopoda HOM05D006853 ORTHO05D008906 1.7e-18 97.4 102 45.1
Cre01.g037650 Chlamydomonas reinhardtii HOM05D006853 ORTHO05D008906 7.0e-12 75.5 181 32.6
PSO478G3347 Papaver somniferum HOM05D006853 ORTHO05D008906 8.5e-10 68.6 48 58.3
BraA09t38070Z Brassica rapa HOM05D006853 ORTHO05D008906 3.4e-06 56.6 41 63.4


User provided reference genes

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