Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 5.1e-114 414.5 216 100.0
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 5.5e-108 394.4 216 94.9
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 5.5e-108 394.4 216 94.9
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 9.4e-108 393.7 216 94.9
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 2.1e-107 392.5 216 93.5
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 90.7
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.7e-104 382.9 216 90.7
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.7e-104 382.9 216 90.3
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.7e-104 382.9 216 89.8
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 90.7
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 90.7
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 90.3
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 90.7
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 89.8
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 89.8
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 90.7
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.8
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.8
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 4.1e-103 378.3 216 89.8
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 89.8
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 89.8
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 9.1e-103 377.1 215 89.8
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 89.4
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 90.3
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 89.4
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 88.0
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 87.0
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 88.9
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 88.4
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 88.9
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 86.6
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 87.5
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 88.9
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 89.4
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 87.0
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 3.5e-102 375.2 215 89.3
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 88.4
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 88.4
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 88.4
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.1
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.1
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.6
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.6
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.6
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 89.4
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.9
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 86.1
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 86.1
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 88.9
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 88.9
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.9
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 88.4
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.4
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.4
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.0
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.4
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.9
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.0
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 85.2
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 85.2
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 85.2
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 85.2
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 85.2
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 5.0e-101 371.3 220 87.7
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 85.2
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 88.0
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.6
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 88.0
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 86.6
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 88.0
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 87.5
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 88.0
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.9e-100 369.4 214 87.9
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 88.0
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 88.0
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 86.6
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 84.7
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 85.2
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 87.0
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 87.5
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 3.2e-100 368.6 227 85.5
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 4.2e-100 368.2 215 87.0
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 86.6
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 86.6
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 87.5
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 86.1
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 88.4
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 86.1
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 86.6
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 84.3
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.1e-99 365.9 215 87.0
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 85.6
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 84.3
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 6.1e-99 364.4 216 87.0
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 8.0e-99 364.0 216 86.1
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 8.0e-99 364.0 216 84.7
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 85.2
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 86.6
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.6
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 87.0
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 1.7e-96 356.3 216 84.7
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 3.7e-96 355.1 221 82.8
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 1.4e-95 353.2 216 83.8
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.4e-95 353.2 199 92.0
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 2.4e-95 352.4 221 81.4
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 5.3e-95 351.3 216 84.3
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 2.7e-94 349.0 217 82.0
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 2.5e-92 342.4 216 79.6
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 7.2e-92 340.9 216 76.9
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 3.0e-90 335.5 221 80.5
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 4.0e-90 335.1 216 81.9
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.5e-89 333.2 216 81.0
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.5e-89 333.2 216 81.5
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 2.0e-89 332.8 216 80.1
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 2.6e-89 332.4 218 78.0
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 80.6
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 77.8
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 1.3e-88 330.1 216 80.6
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 1.1e-87 327.0 216 77.3
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.4e-87 326.6 216 76.9
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 76.4
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.3e-85 320.1 216 71.8
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 2.5e-84 315.8 181 88.4
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 7.2e-84 314.3 216 76.9
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 1.2e-83 313.5 216 75.5
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 3.6e-83 312.0 215 77.2
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 2.0e-81 306.2 276 63.4
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 8.3e-80 300.8 216 75.5
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 2.4e-79 299.3 165 90.9
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 2.4e-79 299.3 165 90.3
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 3.1e-79 298.9 165 89.7
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 5.0e-77 291.6 216 74.1
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.1e-76 290.4 216 73.6
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 3.3e-76 288.9 216 70.8
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.3e-76 288.5 216 73.1
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.4e-74 283.5 219 73.5
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.0e-74 282.3 216 69.9
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 3.0e-74 282.3 217 67.3
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 1.2e-73 280.4 217 68.7
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 6.4e-72 274.6 216 70.4
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 7.0e-71 271.2 353 49.3
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.5e-68 262.7 180 80.0
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 6.2e-67 258.1 165 80.0
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 8.0e-67 257.7 217 68.2
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 8.9e-66 254.2 144 81.2
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 5.0e-61 238.4 217 59.0
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 1.9e-55 219.9 233 53.2
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 9.9e-49 197.6 136 80.9
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.9e-48 196.1 264 50.4
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 7.8e-46 188.0 108 79.6
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 7.8e-46 188.0 108 79.6
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 8.6e-45 184.5 219 45.7
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.6e-44 181.8 135 74.1
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.8e-42 176.8 205 49.3
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 4.6e-38 162.2 106 75.5
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.7e-37 160.2 114 75.4
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 6.6e-37 158.3 97 78.4
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.1e-36 157.5 84 83.3
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.3e-35 154.1 81 87.7
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 3.1e-34 149.4 81 85.2
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 79.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 79.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 79.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 79.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.5e-33 147.1 101 79.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.1e-23 114.4 71 67.6
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.5e-20 104.0 74 81.1
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 6.2e-19 98.6 63 85.7
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.4e-18 96.7 68 80.9
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 9.0e-10 68.2 39 74.4
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 3.4e-09 66.2 39 71.8
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 3.8e-08 62.8 50 62.0
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 3.8e-08 62.8 50 62.0
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 3.8e-08 62.8 50 62.0
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.4e-07 60.8 50 60.0


User provided reference genes

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