Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 8.4e-194 680.2 362 100.0
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 1.3e-165 586.6 365 86.8
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 2.0e-163 579.3 365 84.4
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 3.7e-133 478.8 307 84.7
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 4.9e-125 451.8 366 65.6
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.4e-124 450.3 365 65.8
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.3e-122 443.7 366 67.2
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 5.6e-121 438.3 366 65.3
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 5.2e-119 431.8 363 63.9
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 1.7e-117 426.8 363 64.2
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 2.2e-117 426.4 366 62.6
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.7e-117 425.6 363 61.7
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 6.4e-117 424.9 363 64.5
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 2.4e-116 422.9 362 61.6
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 9.2e-116 421.0 367 62.7
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-115 420.6 362 61.3
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 1.6e-115 420.2 363 60.6
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.0e-115 419.9 363 60.6
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.0e-115 419.9 363 60.6
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 1.9e-113 413.3 363 62.3
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 7.3e-113 411.4 406 57.1
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.2e-112 410.6 364 60.4
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 1.2e-112 410.6 364 61.5
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.1e-112 409.8 363 59.5
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 2.1e-112 409.8 364 61.0
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 6.2e-112 408.3 365 61.9
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 1.8e-111 406.8 366 61.7
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 2.3e-111 406.4 366 61.5
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 3.1e-111 406.0 360 60.8
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 8.9e-111 404.4 360 60.6
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 8.9e-111 404.4 371 61.5
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 3.4e-110 402.5 361 60.4
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 4.4e-110 402.1 360 60.3
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 5.8e-110 401.7 362 60.5
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 2.2e-109 399.8 365 60.5
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 2.9e-109 399.4 365 60.5
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 6.4e-109 398.3 360 61.1
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 8.3e-109 397.9 366 60.9
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.1e-108 397.5 361 60.9
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.4e-108 397.1 361 59.8
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 2.4e-108 396.4 360 60.8
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 7.1e-108 394.8 366 61.7
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 7.1e-108 394.8 360 61.1
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 2.1e-107 393.3 346 62.4
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 2.7e-107 392.9 361 59.3
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 1.3e-106 390.6 368 57.9
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 2.3e-106 389.8 363 59.8
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 3.0e-106 389.4 367 59.1
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 5.1e-106 388.7 367 59.4
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.1e-105 387.5 431 53.6
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 2.5e-105 386.3 363 59.0
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 2.8e-104 382.9 366 56.0
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 3.6e-104 382.5 367 56.7
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.4e-103 380.6 410 53.9
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 1.5e-102 377.1 364 57.4
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 1.5e-102 377.1 368 56.2
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.6e-102 376.3 364 56.9
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 2.6e-102 376.3 366 55.7
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 3.4e-102 375.9 346 60.1
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 4.4e-102 375.6 368 56.2
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 7.6e-102 374.8 347 57.9
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.9e-100 370.2 321 65.4
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.0e-98 364.4 367 55.0
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.3e-98 364.0 359 57.7
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 1.7e-98 363.6 342 58.2
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.7e-98 363.6 365 54.2
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 5.1e-98 362.1 370 54.1
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.1e-97 360.9 351 55.8
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 9.6e-97 357.8 356 57.0
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 3.6e-96 355.9 362 54.1
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 6.2e-96 355.1 339 58.7
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 1.2e-94 350.9 347 52.7
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 3.4e-94 349.4 373 52.3
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 1.9e-92 343.6 367 51.8
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 3.2e-92 342.8 361 54.0
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.6e-91 340.5 364 52.5
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 7.8e-91 338.2 364 52.2
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 7.8e-91 338.2 304 63.2
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 3.9e-90 335.9 364 52.2
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 5.1e-90 335.5 359 52.4
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 3.3e-89 332.8 365 51.2
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 7.3e-89 331.6 371 50.4
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.3e-88 330.9 364 51.1
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 1.3e-88 330.9 300 62.3
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 4.8e-88 328.9 364 50.5
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.1e-87 327.8 364 50.8
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 3.1e-87 326.2 304 60.2
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 6.9e-87 325.1 368 51.1
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 2.0e-86 323.6 362 51.1
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 2.9e-85 319.7 366 49.2
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.9e-84 317.0 362 50.3
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 1.9e-84 317.0 367 49.6
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 7.1e-84 315.1 367 50.4
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 2.1e-83 313.5 367 48.5
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 4.3e-81 305.8 364 47.3
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.4e-79 300.1 363 48.5
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.4e-79 300.1 364 48.9
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 5.3e-79 298.9 367 46.9
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 6.9e-79 298.5 363 47.4
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 9.0e-79 298.1 367 46.9
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 6.4e-77 292.0 349 48.4
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 1.4e-76 290.8 299 55.2
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.9e-76 290.4 362 45.9
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.9e-76 290.4 357 44.8
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.2e-75 287.7 353 47.0
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 4.6e-75 285.8 348 47.1
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 2.5e-73 280.0 371 46.1
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 3.3e-73 279.6 352 48.3
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 5.6e-73 278.9 318 50.0
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 2.8e-72 276.6 358 43.0
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 4.8e-72 275.8 365 44.1
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 4.0e-71 272.7 287 55.4
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 6.9e-71 271.9 287 55.7
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 2.0e-62 243.8 245 58.0
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 2.9e-61 240.0 360 41.9
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 9.3e-60 235.0 246 56.9
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.1e-59 233.8 358 39.9
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 6.7e-58 228.8 240 56.2
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 1.3e-56 224.6 351 41.3
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.2e-56 223.8 345 40.3
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.8e-55 220.7 276 49.3
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.5e-54 216.1 345 40.0
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.1e-49 201.4 238 51.3
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 9.1e-47 191.8 237 47.7
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 9.4e-44 181.8 315 38.4
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 2.3e-42 177.2 364 32.4
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 3.0e-42 176.8 275 42.5
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 5.7e-41 172.6 300 39.7
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 7.0e-39 165.6 242 47.5
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 4.5e-38 162.9 128 61.7
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 9.4e-36 155.2 449 29.0
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.6e-30 137.9 125 53.6
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.5e-28 131.3 188 43.6
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 3.0e-26 123.6 370 27.3
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 2.6e-25 120.6 184 47.3
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.7e-16 91.3 263 28.9
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 5.0e-13 79.7 56 64.3
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 3.6e-11 73.6 56 60.7
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 4.7e-11 73.2 55 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 2.3e-10 70.9 138 31.9
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 2.3e-10 70.9 146 37.7
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 1.1e-07 62.0 204 27.0


User provided reference genes

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