Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 2.8e-74 282.0 150 100.0
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 5.1e-60 234.6 150 85.3
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 6.8e-57 224.2 150 80.7
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 3.4e-56 221.9 150 80.7
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 1.2e-53 213.4 150 79.3
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.4e-46 189.9 147 72.8
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 3.2e-46 188.7 149 70.5
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.3e-44 183.3 147 70.1
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 3.3e-43 178.7 151 67.5
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 5.6e-43 177.9 153 66.7
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 1.3e-42 176.8 149 66.4
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 3.6e-42 175.3 153 64.7
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 4.8e-42 174.9 148 68.9
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 4.8e-42 174.9 142 68.3
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 1.4e-41 173.3 148 68.2
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.8e-41 172.9 147 66.7
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.8e-41 172.9 149 65.1
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.8e-41 172.9 149 65.1
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.4e-41 172.6 149 65.8
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 3.1e-41 172.2 146 68.5
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.5e-40 169.9 151 63.6
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 3.4e-40 168.7 150 62.7
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 3.4e-40 168.7 141 66.7
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 5.8e-40 167.9 141 66.0
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 5.8e-40 167.9 141 65.2
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 7.6e-40 167.5 144 66.7
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 7.6e-40 167.5 144 66.0
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 9.9e-40 167.2 147 63.3
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 1.7e-39 166.4 144 66.0
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 6.4e-39 164.5 147 64.6
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 8.4e-39 164.1 147 64.6
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.1e-38 163.7 141 63.8
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 1.1e-38 163.7 148 64.9
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 1.1e-38 163.7 149 63.8
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.1e-38 163.7 142 63.4
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 1.4e-38 163.3 161 60.2
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 1.4e-38 163.3 142 66.9
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 2.4e-38 162.5 147 63.9
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 1.6e-37 159.8 142 64.1
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 2.1e-37 159.5 149 61.7
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 2.7e-37 159.1 156 59.6
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 2.7e-37 159.1 150 61.3
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 7.9e-37 157.5 146 64.4
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 1.0e-36 157.1 141 63.1
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.3e-36 156.8 144 63.2
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 1.3e-36 156.8 142 61.3
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 1.3e-36 156.8 141 64.5
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 2.3e-36 156.0 142 59.9
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 3.0e-36 155.6 143 61.5
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 3.0e-36 155.6 144 62.5
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 3.0e-36 155.6 143 59.4
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 3.0e-36 155.6 143 58.7
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 5.1e-36 154.8 143 60.1
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 6.7e-36 154.5 142 60.6
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 6.7e-36 154.5 143 62.2
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 6.7e-36 154.5 143 62.2
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 6.7e-36 154.5 143 58.0
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 8.7e-36 154.1 143 58.0
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.1e-35 153.7 132 65.9
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.5e-35 153.3 141 61.7
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 1.5e-35 153.3 148 58.8
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 1.9e-35 152.9 144 62.5
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 1.9e-35 152.9 143 59.4
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.9e-35 152.9 157 61.1
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 2.5e-35 152.5 144 62.5
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 3.3e-35 152.1 143 58.7
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 3.3e-35 152.1 146 61.6
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 3.3e-35 152.1 144 62.5
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 4.3e-35 151.8 149 59.1
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 5.6e-35 151.4 142 58.5
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 7.4e-35 151.0 138 65.9
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.3e-34 150.2 143 61.5
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 2.1e-34 149.4 143 60.8
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 2.1e-34 149.4 143 60.8
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 2.8e-34 149.1 149 59.1
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 1.8e-33 146.4 141 59.6
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.8e-33 146.4 142 60.6
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 2.4e-33 146.0 141 56.0
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 2.4e-33 146.0 143 60.1
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 3.1e-33 145.6 150 60.0
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 4.0e-33 145.2 141 58.2
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 4.0e-33 145.2 149 55.0
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 6.9e-33 144.4 148 58.8
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 9.0e-33 144.1 150 56.7
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 1.2e-32 143.7 134 63.4
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 1.5e-32 143.3 140 55.0
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.0e-32 142.9 131 63.4
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 3.4e-32 142.1 131 64.1
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 3.4e-32 142.1 141 56.7
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 3.4e-32 142.1 141 58.2
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 3.4e-32 142.1 136 59.6
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 3.4e-32 142.1 150 56.7
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 3.8e-31 138.7 141 56.0
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 1.4e-30 136.7 141 53.9
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 1.4e-30 136.7 139 59.7
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 1.9e-30 136.3 142 54.9
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 1.9e-30 136.3 142 55.6
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 3.2e-30 135.6 141 55.3
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 9.3e-30 134.0 140 55.0
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 2.1e-29 132.9 141 52.5
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 2.7e-29 132.5 146 52.1
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 2.7e-29 132.5 71 95.8
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 7.9e-29 131.0 141 51.8
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 1.8e-28 129.8 136 55.1
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 6.7e-28 127.9 74 89.2
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.1e-27 127.1 151 51.7
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 3.3e-27 125.6 138 54.3
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 3.3e-27 125.6 138 54.3
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 3.3e-27 125.6 138 54.3
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 3.3e-27 125.6 138 54.3
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.3e-26 123.6 142 54.2
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 3.7e-26 122.1 138 50.7
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 8.2e-26 120.9 151 54.3
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 1.2e-24 117.1 140 51.4
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 2.0e-24 116.3 147 46.9
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 2.6e-24 115.9 146 48.6
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 4.9e-23 111.7 155 47.1
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 3.2e-22 109.0 115 55.7
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 2.1e-21 106.3 127 53.5
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.8e-20 103.2 136 46.3
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 1.9e-19 99.8 142 42.3
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 3.3e-19 99.0 133 48.1
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 8.2e-18 94.4 116 49.1
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 5.9e-16 88.2 141 42.6
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 1.3e-15 87.0 69 63.8
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 6.1e-13 78.2 98 48.0
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 1.4e-09 67.0 141 33.3
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 2.0e-08 63.2 70 45.7
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 3.4e-08 62.4 65 55.4
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 2.9e-07 59.3 74 48.6
Zm00001eb181930 Zea mays HOM05D001107 ORTHO05D007353 4.2e-06 55.5 44 68.2


User provided reference genes

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