Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.1e-65 253.1 119 100.0
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 6.0e-32 141.0 115 65.2
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.6e-27 125.6 120 60.0
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.5e-25 119.0 128 50.0
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.3e-23 113.2 126 50.0
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.0e-18 97.1 131 45.8
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.1e-17 93.6 86 47.7
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 1.1e-17 93.6 117 37.6
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.4e-17 93.2 119 40.3
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.9e-17 92.8 91 44.0
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 1.9e-17 92.8 117 39.3
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.9e-17 92.8 96 45.8
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.5e-17 92.4 93 44.1
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 2.5e-17 92.4 96 43.8
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.5e-17 92.4 94 50.0
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 3.2e-17 92.0 94 45.7
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 4.2e-17 91.7 123 42.3
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 4.2e-17 91.7 114 42.1
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 4.2e-17 91.7 105 44.8
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.2e-17 91.7 92 41.3
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 7.2e-17 90.9 120 40.0
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 7.2e-17 90.9 96 44.8
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 7.2e-17 90.9 96 44.8
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 7.2e-17 90.9 120 40.0
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 9.4e-17 90.5 117 39.3
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 9.4e-17 90.5 88 45.5
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-16 90.1 122 39.3
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.2e-16 90.1 122 39.3
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.2e-16 90.1 81 51.9
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.6e-16 89.7 97 44.3
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.6e-16 89.7 117 39.3
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.1e-16 89.4 96 43.8
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.1e-16 89.4 96 43.8
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 2.1e-16 89.4 92 47.8
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.1e-16 89.4 88 43.2
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.7e-16 89.0 96 45.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 2.7e-16 89.0 86 46.5
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.7e-16 89.0 85 44.7
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.7e-16 89.0 131 40.5
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 3.6e-16 88.6 94 43.6
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.6e-16 88.2 85 47.1
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 4.6e-16 88.2 88 44.3
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.6e-16 88.2 84 48.8
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 7.9e-16 87.4 98 41.8
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.9e-16 87.4 93 44.1
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.0e-15 87.0 122 38.5
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.0e-15 87.0 122 38.5
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.0e-15 87.0 121 40.5
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.0e-15 87.0 85 44.7
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.0e-15 87.0 93 44.1
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.4e-15 86.7 86 43.0
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 1.4e-15 86.7 85 47.1
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.4e-15 86.7 86 45.3
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.8e-15 86.3 95 41.1
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.3e-15 85.9 98 46.9
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.3e-15 85.9 82 47.6
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.0e-15 85.5 94 43.6
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 3.0e-15 85.5 98 42.9
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.0e-15 85.5 93 43.0
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.0e-15 85.5 93 43.0
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.9e-15 85.1 97 47.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.9e-15 85.1 106 41.5
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 3.9e-15 85.1 92 42.4
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 5.1e-15 84.7 123 37.4
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.1e-15 84.7 117 39.3
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 6.7e-15 84.3 93 43.0
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.1e-14 83.6 86 44.2
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.1e-14 83.6 90 47.8
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.5e-14 83.2 96 42.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.5e-14 83.2 115 37.4
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 2.0e-14 82.8 85 45.9
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 2.0e-14 82.8 90 47.8
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 2.5e-14 82.4 104 40.4
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.5e-14 82.4 100 43.0
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 3.3e-14 82.0 110 36.4
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.3e-14 81.6 88 45.5
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.3e-14 81.6 79 45.6
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.3e-14 81.6 110 36.4
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 4.3e-14 81.6 86 43.0
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 4.3e-14 81.6 118 36.4
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 5.7e-14 81.3 86 48.8
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 5.7e-14 81.3 107 37.4
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.4e-14 80.9 92 42.4
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 7.4e-14 80.9 110 35.5
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 7.4e-14 80.9 90 45.6
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 9.7e-14 80.5 84 45.2
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 9.7e-14 80.5 84 45.2
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 9.7e-14 80.5 88 44.3
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-13 80.1 93 45.2
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.3e-13 80.1 87 46.0
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.7e-13 79.7 86 43.0
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.7e-13 79.7 91 38.5
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.7e-13 79.7 102 42.2
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.7e-13 79.7 114 35.1
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.2e-13 79.3 89 47.2
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.8e-13 79.0 95 38.9
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.8e-13 79.0 104 39.4
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 3.7e-13 78.6 95 43.2
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 3.7e-13 78.6 96 44.8
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 4.8e-13 78.2 95 37.9
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 4.8e-13 78.2 90 44.4
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.3e-13 77.8 81 43.2
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.3e-13 77.8 81 43.2
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.3e-13 77.8 81 43.2
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.3e-13 77.8 81 43.2
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 6.3e-13 77.8 90 47.8
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 8.2e-13 77.4 86 45.3
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.1e-12 77.0 89 48.3
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.1e-12 77.0 89 48.3
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.1e-12 77.0 94 40.4
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.1e-12 77.0 113 40.7
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.4e-12 76.6 112 38.4
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.4e-12 76.6 95 41.1
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.4e-12 76.6 99 38.4
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.8e-12 76.3 104 39.4
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.8e-12 76.3 101 39.6
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.4e-12 75.9 81 46.9
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 2.4e-12 75.9 100 43.0
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 4.1e-12 75.1 96 43.8
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 6.9e-12 74.3 96 43.8
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 6.9e-12 74.3 96 43.8
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.9e-12 74.3 97 41.2
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 6.9e-12 74.3 117 37.6
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.1e-12 73.9 97 41.2
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 1.2e-11 73.6 86 38.4
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.5e-11 73.2 96 38.5
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.5e-11 73.2 87 44.8
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 2.0e-11 72.8 95 41.1
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.0e-11 72.8 94 43.6
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 2.6e-11 72.4 92 45.7
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.6e-11 72.4 95 46.3
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 3.4e-11 72.0 98 40.8
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.4e-11 72.0 109 37.6
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.4e-11 72.0 78 42.3
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 3.4e-11 72.0 85 42.4
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.5e-11 71.6 91 44.0
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 5.9e-11 71.2 80 42.5
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.7e-11 70.9 96 38.5
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 7.7e-11 70.9 125 37.6
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.7e-11 70.9 91 42.9
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.0e-10 70.5 73 45.2
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.0e-10 70.5 103 40.8
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 1.3e-10 70.1 99 44.4
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.3e-10 70.1 88 40.9
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.3e-10 70.1 88 39.8
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.3e-10 70.1 81 45.7
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 2.2e-10 69.3 88 43.2
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.2e-10 69.3 108 36.1
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 2.2e-10 69.3 91 42.9
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.2e-10 69.3 55 56.4
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.2e-10 69.3 103 40.8
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.9e-10 68.9 57 49.1
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.8e-10 68.6 91 42.9
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 3.8e-10 68.6 79 44.3
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 5.0e-10 68.2 79 41.8
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 6.5e-10 67.8 80 38.8
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 6.5e-10 67.8 78 43.6
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.5e-10 67.4 93 41.9
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.1e-09 67.0 100 39.0
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.9e-09 66.2 79 43.0
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.9e-09 66.2 78 42.3
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.5e-09 65.9 99 40.4
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.2e-09 65.5 108 39.8
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.2e-09 65.1 77 40.3
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 5.5e-09 64.7 92 38.0
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 5.5e-09 64.7 84 44.0
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.2e-09 64.3 45 53.3
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 7.2e-09 64.3 86 37.2
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 9.4e-09 63.9 96 37.5
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.2e-08 63.5 105 35.2
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.2e-08 63.5 84 42.9
ECA232G3842 Erigeron canadensis HOM05D003592 ORTHO05D029303 1.6e-08 63.2 119 35.3
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 2.7e-08 62.4 79 41.8
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 3.6e-08 62.0 75 36.0
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.1e-08 61.2 81 44.4
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.9e-08 60.8 85 42.4
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.9e-08 60.8 85 40.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.0e-07 60.5 77 36.4
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.8e-07 59.7 86 41.9
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.8e-07 59.7 73 38.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 3.9e-07 58.5 82 40.2
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.9e-07 58.5 95 34.7
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.9e-07 58.5 95 38.9
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.7e-07 57.8 95 37.9
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 8.8e-07 57.4 76 34.2
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.5e-06 56.6 95 36.8
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 3.3e-06 55.5 85 36.5


User provided reference genes

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