Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 2.9e-134 481.9 241 100.0
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 7.2e-117 424.1 245 86.5
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 1.0e-115 420.2 245 86.1
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 4.4e-114 414.8 245 84.9
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 5.6e-93 344.7 239 72.0
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 1.4e-91 340.1 248 70.6
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 2.0e-90 336.3 201 78.1
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 7.5e-90 334.3 245 68.6
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 7.5e-90 334.3 231 72.3
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.3e-89 333.6 201 77.1
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.3e-89 333.6 235 70.6
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 3.7e-89 332.0 248 69.0
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 4.9e-89 331.6 195 79.0
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 4.9e-89 331.6 257 68.5
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.9e-88 329.7 197 78.7
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.9e-88 329.7 197 79.2
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.4e-88 329.3 238 71.0
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 3.2e-88 328.9 202 78.2
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 4.1e-88 328.6 238 71.0
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 5.4e-88 328.2 245 69.8
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 5.4e-88 328.2 244 68.9
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 9.2e-88 327.4 251 66.9
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 1.6e-87 326.6 237 70.0
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 2.1e-87 326.2 234 70.5
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 2.7e-87 325.9 245 67.3
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 2.7e-87 325.9 244 68.0
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 4.6e-87 325.1 247 66.8
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 1.0e-86 323.9 182 83.5
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 1.0e-86 323.9 191 78.5
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.7e-86 323.2 184 80.4
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.7e-86 323.2 203 75.4
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 1.7e-86 323.2 203 75.4
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 3.0e-86 322.4 239 69.5
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 3.0e-86 322.4 189 78.3
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 3.0e-86 322.4 231 71.9
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 5.1e-86 321.6 197 76.1
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 6.6e-86 321.2 243 66.7
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.1e-85 320.5 239 67.8
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 2.5e-85 319.3 246 67.1
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 2.5e-85 319.3 243 69.1
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 9.5e-85 317.4 234 67.1
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 9.5e-85 317.4 215 74.0
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.2e-84 317.0 239 66.9
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.2e-84 317.0 177 81.4
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 1.6e-84 316.6 237 68.8
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.6e-84 316.6 238 68.1
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 2.1e-84 316.2 257 64.2
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 4.7e-84 315.1 182 79.7
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 6.2e-84 314.7 218 71.6
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.1e-83 313.9 237 67.9
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 4.0e-83 312.0 248 64.1
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 5.2e-83 311.6 202 74.3
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 8.9e-83 310.8 202 75.2
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 1.2e-82 310.5 225 68.9
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 1.2e-82 310.5 229 67.2
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 2.0e-82 309.7 189 77.2
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 2.0e-82 309.7 208 71.2
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 3.4e-82 308.9 218 70.6
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 3.4e-82 308.9 188 75.5
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 7.6e-82 307.8 182 76.4
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 9.9e-82 307.4 234 63.2
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 9.9e-82 307.4 206 71.4
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 1.3e-81 307.0 248 64.1
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 1.3e-81 307.0 206 70.4
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.3e-81 307.0 186 76.3
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 1.3e-81 307.0 230 65.2
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 1.7e-81 306.6 202 72.8
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 1.7e-81 306.6 187 75.4
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 2.2e-81 306.2 251 63.3
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 2.9e-81 305.8 248 63.7
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 4.9e-81 305.1 250 63.2
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 8.4e-81 304.3 230 65.2
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 1.1e-80 303.9 250 63.2
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.1e-80 303.9 229 65.9
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.4e-80 303.5 230 65.2
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.4e-80 303.5 230 65.7
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 1.9e-80 303.1 233 64.8
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.9e-80 303.1 193 73.1
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 4.1e-80 302.0 235 66.0
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 5.4e-80 301.6 196 70.9
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 7.1e-80 301.2 245 64.1
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 9.2e-80 300.8 234 61.5
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.2e-79 300.4 233 63.9
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.1e-79 299.7 227 66.5
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.7e-78 296.6 238 60.9
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 5.1e-78 295.0 188 72.3
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 6.6e-78 294.7 237 63.7
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 6.6e-78 294.7 238 62.6
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 8.6e-78 294.3 236 63.6
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.1e-76 289.7 256 58.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 8.1e-76 287.7 183 70.5
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.4e-75 287.0 258 60.1
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 6.8e-75 284.6 237 61.2
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 4.4e-74 282.0 233 61.4
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.3e-70 270.4 214 62.6
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 5.3e-67 258.5 180 67.8
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 1.5e-66 256.9 239 54.4
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 2.6e-66 256.1 162 72.8
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 3.4e-66 255.8 230 56.5
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 2.2e-65 253.1 182 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.4e-64 250.4 234 56.4
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.9e-64 250.0 144 81.9
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 2.4e-64 249.6 235 56.2
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 3.2e-64 249.2 144 79.2
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.1e-63 246.5 180 65.6
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 1.0e-62 244.2 229 56.3
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 6.6e-62 241.5 232 54.3
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 8.7e-62 241.1 192 62.5
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 5.6e-61 238.4 220 53.2
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.4e-59 233.8 141 76.6
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 1.2e-58 230.7 143 73.4
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 2.0e-58 229.9 140 75.0
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 2.6e-58 229.6 136 78.7
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.0e-55 218.4 216 57.4
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.2e-50 204.1 188 54.8
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.0e-46 191.0 127 69.3
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.0e-46 191.0 270 45.9
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 7.4e-45 184.9 122 68.9
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 5.9e-42 175.3 163 51.5
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 5.5e-40 168.7 268 37.7
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 7.9e-39 164.9 167 51.5
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 2.2e-33 146.7 130 61.5
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 1.9e-32 143.7 115 60.9
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 9.1e-27 124.8 72 76.4
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.5e-26 124.0 193 37.3
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 5.9e-26 122.1 72 79.2
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 7.7e-26 121.7 84 69.0
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.1e-21 107.8 74 67.6
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 3.6e-15 86.3 54 68.5
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 4.8e-12 75.9 89 49.4
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 3.5e-10 69.7 39 79.5
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 7.7e-10 68.6 43 72.1
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 2.9e-09 66.6 38 73.7
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 5.0e-09 65.9 35 82.9


User provided reference genes

Program Settings