Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 0.0e+00 1303.5 762 100.0
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 4.9e-268 927.9 775 70.7
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 9.2e-259 897.1 867 64.4
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 2.6e-245 852.4 775 66.7
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 6.5e-196 688.3 777 58.0
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 1.1e-195 687.6 778 60.2
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.0e-193 681.0 782 56.8
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.0e-189 666.8 784 55.4
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.1e-186 656.8 795 55.5
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 6.3e-183 645.2 781 54.2
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.8e-182 643.7 773 59.1
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 4.1e-182 642.5 752 54.9
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 1.3e-180 637.5 718 60.3
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 8.5e-180 634.8 775 53.7
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 5.2e-177 625.5 778 53.0
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 9.8e-176 621.3 774 52.3
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 1.4e-174 617.5 775 52.3
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 7.7e-173 611.7 764 53.5
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 3.8e-172 609.4 772 51.7
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.8e-170 603.2 762 51.8
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 3.4e-168 596.3 776 53.0
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 7.5e-168 595.1 718 58.1
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 3.7e-167 592.8 785 51.0
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.9e-167 592.4 615 60.2
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.4e-166 590.1 775 51.7
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 5.4e-166 589.0 780 51.4
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.5e-165 585.9 647 57.5
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 3.3e-163 579.7 777 52.0
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 1.2e-162 577.8 771 51.6
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 1.2e-162 577.8 771 51.6
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 2.1e-162 577.0 741 51.8
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.4e-161 574.3 779 51.6
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 4.0e-161 572.8 794 50.1
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.8e-161 572.0 781 48.9
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 8.9e-161 571.6 781 49.3
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.4e-160 569.7 781 49.2
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 2.9e-159 566.6 781 49.0
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.4e-159 565.5 752 49.5
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 6.4e-159 565.5 793 49.4
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 1.4e-158 564.3 771 49.7
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 5.4e-158 562.4 804 49.8
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 9.2e-158 561.6 769 50.1
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 2.3e-156 557.0 785 47.9
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.0e-156 556.6 797 48.6
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 1.9e-155 553.9 776 48.5
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 5.6e-155 552.4 825 47.5
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.6e-154 550.8 795 48.2
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.7e-154 549.3 763 48.6
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 4.7e-154 549.3 767 49.4
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 6.2e-154 548.9 762 49.7
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 5.2e-153 545.8 700 51.4
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 2.2e-151 540.4 805 48.8
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 7.0e-150 535.4 770 49.5
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 7.0e-150 535.4 761 48.1
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 2.7e-149 533.5 719 49.8
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 2.7e-149 533.5 750 47.5
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 3.5e-149 533.1 795 48.3
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-149 532.3 771 48.1
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-148 530.8 762 47.8
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.7e-148 530.8 772 49.2
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 1.1e-147 528.1 717 49.9
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 2.1e-146 523.9 769 48.6
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 4.7e-146 522.7 800 50.2
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.1e-145 521.5 797 47.6
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-145 520.8 778 46.8
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.5e-144 517.7 772 46.8
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 5.8e-144 515.8 772 47.2
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 5.8e-144 515.8 754 47.6
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.4e-142 510.4 764 48.3
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 3.2e-142 510.0 783 47.0
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.7e-140 504.2 795 45.4
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 3.9e-140 503.1 779 48.3
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 7.3e-139 498.8 741 48.3
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 2.4e-137 493.8 770 46.5
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 2.6e-136 490.3 780 47.1
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 6.4e-135 485.7 630 51.6
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 1.1e-134 485.0 783 44.6
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 7.1e-134 482.3 775 46.3
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 9.2e-134 481.9 714 47.2
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 5.6e-131 472.6 786 44.1
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 7.3e-131 472.2 798 44.0
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 5.2e-129 466.1 774 44.4
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.6e-128 463.8 626 50.2
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 1.7e-127 461.1 781 45.1
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 6.4e-127 459.1 805 43.4
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 7.1e-126 455.7 767 43.8
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 9.3e-126 455.3 782 45.0
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 3.5e-125 453.4 772 44.8
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 5.1e-124 449.5 744 45.0
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 5.6e-123 446.0 858 42.5
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 7.3e-123 445.7 775 43.6
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 3.1e-121 440.3 776 41.6
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 4.5e-120 436.4 614 47.1
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 1.4e-118 431.4 783 42.9
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 1.8e-116 424.5 768 43.0
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 2.3e-116 424.1 615 47.8
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 3.9e-116 423.3 768 42.6
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 1.1e-115 421.8 622 47.4
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 5.6e-115 419.5 611 46.8
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 7.4e-115 419.1 768 43.1
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 2.8e-114 417.2 782 42.3
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 6.2e-114 416.0 723 43.8
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 2.0e-112 411.0 767 42.2
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.9e-110 404.4 781 41.5
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 4.2e-110 403.3 621 45.6
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 1.8e-105 387.9 725 42.3
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 2.2e-103 380.9 594 45.3
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.6e-98 364.8 774 40.1
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 3.4e-96 357.1 743 38.9
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.7e-83 312.4 405 51.6
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 8.2e-82 309.3 298 61.7
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.4e-81 307.8 489 46.6
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 7.0e-81 306.2 775 36.6
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 4.5e-80 303.5 332 52.4
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 2.5e-78 297.7 631 39.5
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 5.5e-78 296.6 408 48.8
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.0e-76 290.8 352 51.4
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 2.8e-74 284.3 785 34.6
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 1.6e-72 278.5 461 46.4
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.2e-69 268.9 431 46.2
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 8.3e-58 229.6 697 32.1
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 9.8e-51 206.1 214 56.1
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 5.6e-46 190.3 546 31.3
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 8.9e-44 183.0 647 30.4
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-40 171.4 155 61.9
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 4.6e-40 170.6 184 58.2
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-38 165.2 481 33.1
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 2.8e-37 161.4 295 40.7
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 7.0e-33 146.7 175 52.0
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 2.7e-32 144.8 202 50.0
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.0e-28 131.0 378 32.3
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 3.4e-27 127.9 241 44.4
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.2e-25 121.3 748 25.7
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-23 115.9 172 48.8
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 2.8e-21 108.2 246 34.1
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.0e-19 102.1 90 61.1
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 4.9e-18 97.4 248 34.7
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 6.4e-18 97.1 247 34.0
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 1.1e-17 96.3 325 25.8
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-13 82.8 68 67.6
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.6e-13 81.3 151 35.8
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.0e-11 75.5 81 55.6
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 1.9e-09 68.9 48 72.9
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 7.1e-09 67.0 61 62.3
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-08 65.9 40 80.0
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 7.8e-08 63.5 173 30.6
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 2.3e-07 62.0 40 72.5
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-06 59.7 59 59.3
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.3e-06 57.0 33 81.8


User provided reference genes

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