Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 1.1e-32 142.9 80 100.0
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 2.7e-28 128.3 68 94.1
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 7.9e-28 126.7 68 88.2
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 8.8e-27 123.2 79 77.2
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 7.4e-26 120.2 68 80.9
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 7.4e-26 120.2 67 82.1
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 9.7e-26 119.8 67 83.6
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 2.2e-25 118.6 80 73.8
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 1.1e-24 116.3 67 79.1
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.4e-24 115.9 68 77.9
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.4e-24 115.9 79 68.4
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.8e-24 115.5 68 77.9
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 2.4e-24 115.2 68 77.9
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 3.1e-24 114.8 68 79.4
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 4.1e-24 114.4 68 77.9
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 9.1e-24 113.2 66 74.2
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 1.5e-23 112.5 65 78.5
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.5e-23 112.5 69 78.3
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.0e-23 112.1 68 75.0
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 2.0e-23 112.1 68 75.0
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 3.4e-23 111.3 68 70.6
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 3.4e-23 111.3 61 82.0
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 4.5e-23 110.9 61 80.3
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 4.5e-23 110.9 61 80.3
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 4.5e-23 110.9 66 74.2
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 4.5e-23 110.9 68 73.5
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 7.7e-23 110.2 68 75.0
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.0e-22 109.8 78 64.1
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.3e-22 109.4 61 78.7
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.7e-22 109.0 66 71.2
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 2.2e-22 108.6 63 74.6
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.2e-22 108.6 61 80.3
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.2e-22 108.6 61 80.3
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 2.9e-22 108.2 60 80.0
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 2.9e-22 108.2 68 72.1
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 3.8e-22 107.8 68 73.5
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 5.0e-22 107.5 67 73.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 5.0e-22 107.5 79 62.0
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 8.5e-22 106.7 66 71.2
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.1e-21 106.3 67 73.1
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.1e-21 106.3 66 69.7
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.1e-21 106.3 67 70.1
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.9e-21 105.5 75 64.0
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 2.5e-21 105.1 68 72.1
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 2.5e-21 105.1 68 70.6
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 2.5e-21 105.1 68 72.1
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 3.2e-21 104.8 68 72.1
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 5.5e-21 104.0 68 70.6
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 7.2e-21 103.6 79 60.8
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 7.2e-21 103.6 79 58.2
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 7.2e-21 103.6 68 69.1
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 7.2e-21 103.6 65 70.8
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 7.2e-21 103.6 68 70.6
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 7.2e-21 103.6 68 70.6
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 9.4e-21 103.2 67 71.6
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 9.4e-21 103.2 68 66.2
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 9.4e-21 103.2 66 74.2
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.6e-20 102.4 68 66.2
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 1.6e-20 102.4 57 77.2
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 7.9e-20 100.1 66 66.7
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 1.0e-19 99.8 68 66.2
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.4e-19 99.4 61 72.1
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 5.1e-19 97.4 68 63.2
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 8.8e-19 96.7 63 63.5
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.1e-18 96.3 64 65.6
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 3.3e-18 94.7 63 69.8
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 5.7e-18 94.0 68 58.8
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 2.2e-17 92.0 65 58.5
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 8.2e-17 90.1 68 69.1
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.2e-15 86.3 46 73.9
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.6e-15 85.9 67 59.7
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 3.5e-15 84.7 64 60.9
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 4.5e-15 84.3 80 51.2
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.0e-14 83.2 66 56.1
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.3e-14 82.8 66 56.1
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.3e-14 82.8 66 56.1
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 1.7e-14 82.4 55 60.0
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 1.7e-14 82.4 55 60.0
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 2.2e-14 82.0 44 72.7
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.9e-14 81.6 66 56.1
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 2.9e-14 81.6 101 42.6
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 5.0e-14 80.9 67 56.7
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.1e-13 79.7 67 55.2
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 1.5e-13 79.3 54 59.3
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 1.5e-13 79.3 54 59.3
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 2.5e-13 78.6 77 49.4
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 3.2e-13 78.2 54 61.1
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 4.2e-13 77.8 46 69.6
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 5.5e-13 77.4 54 59.3
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 9.4e-13 76.6 54 57.4
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 2.1e-12 75.5 55 61.8
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 3.6e-12 74.7 79 45.6
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 3.6e-12 74.7 50 68.0
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 4.7e-12 74.3 68 54.4
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 6.1e-12 73.9 61 45.9
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 8.0e-12 73.6 76 48.7
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 8.0e-12 73.6 78 44.9
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 8.0e-12 73.6 61 45.9
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.0e-11 73.2 53 52.8
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.4e-11 72.8 44 70.5
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 1.4e-11 72.8 44 70.5
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 1.4e-11 72.8 44 70.5
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 1.4e-11 72.8 44 70.5
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 1.4e-11 72.8 70 51.4
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 2.3e-11 72.0 64 48.4
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 2.3e-11 72.0 38 76.3
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 2.3e-11 72.0 61 52.5
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.0e-11 71.6 53 49.1
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 6.7e-11 70.5 49 61.2
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.1e-10 69.7 40 72.5
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 4.4e-10 67.8 37 73.0
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 5.7e-10 67.4 43 65.1
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 5.7e-10 67.4 57 52.6
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 7.5e-10 67.0 50 64.0
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 7.5e-10 67.0 39 69.2
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 9.7e-10 66.6 54 51.9
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 1.3e-09 66.2 63 46.0
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 4.8e-09 64.3 37 67.6
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-09 64.3 41 63.4
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 6.3e-09 63.9 42 59.5
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 8.2e-09 63.5 37 64.9
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.4e-08 62.0 47 48.9
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 2.4e-08 62.0 48 50.0
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 3.1e-08 61.6 156 28.2
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 1.2e-07 59.7 65 44.6
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 4.5e-07 57.8 37 59.5
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 3.8e-06 54.7 37 56.8


User provided reference genes

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