Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014936 Sechium edule HOM05D003319 ORTHO05D003739 1.6e-265 919.1 522 100.0
ClCG08G011640 Citrullus lanatus HOM05D003319 ORTHO05D003739 9.3e-194 680.6 517 74.9
CsaV3_2G030210 Cucumis sativus L. HOM05D003319 ORTHO05D003739 3.3e-175 619.0 551 66.8
MELO3C011083.2 Cucumis melo HOM05D003319 ORTHO05D003739 1.4e-168 597.0 586 61.8
Sed0025417 Sechium edule HOM05D003319 ORTHO05D003739 3.4e-135 486.1 424 67.2
QL09p017848 Quercus lobata HOM05D003319 ORTHO05D003739 1.5e-63 248.1 538 38.8
Cfa013800 Carpinus fangiana HOM05D003319 ORTHO05D003739 2.2e-62 244.2 388 44.3
CiPaw.14G112200 Carya illinoinensis HOM05D003319 ORTHO05D003739 6.5e-62 242.7 518 38.2
CiPaw.07G165000 Carya illinoinensis HOM05D003319 ORTHO05D003739 1.9e-61 241.1 538 37.2
CiPaw.08G055800 Carya illinoinensis HOM05D003319 ORTHO05D003739 2.5e-61 240.7 448 41.3
Dinv42609 Davidia involucrata HOM05D003319 ORTHO05D003739 4.2e-61 240.0 413 43.1
Ciclev10000622m.g Citrus clementina HOM05D003319 ORTHO05D003739 7.1e-61 239.2 514 38.5
Cfa009865 Carpinus fangiana HOM05D003319 ORTHO05D003739 3.5e-60 236.9 407 43.7
Atru.chr13.1006 Acer truncatum HOM05D003319 ORTHO05D003739 6.1e-60 236.1 459 39.2
Haze_23237 Corylus avellana HOM05D003319 ORTHO05D003739 3.0e-59 233.8 510 38.2
Eucgr.F02154 Eucalyptus grandis HOM05D003319 ORTHO05D003739 4.3e-58 229.9 428 40.2
Haze_22463 Corylus avellana HOM05D003319 ORTHO05D003739 9.7e-58 228.8 456 38.8
ClCG11G014590 Citrullus lanatus HOM05D003319 ORTHO05D003739 2.2e-57 227.6 384 41.4
QL01p017023 Quercus lobata HOM05D003319 ORTHO05D003739 2.8e-57 227.3 601 35.8
Manes.18G058300 Manihot esculenta HOM05D003319 ORTHO05D003739 1.2e-55 221.9 505 37.4
CANSAT35G1730 Cannabis sativa HOM05D003319 ORTHO05D003739 3.4e-55 220.3 524 38.7
GSVIVG01009184001 Vitis vinifera HOM05D003319 ORTHO05D003739 2.9e-54 217.2 539 37.7
Prupe.1G532600 Prunus persica HOM05D003319 ORTHO05D003739 5.0e-54 216.5 468 40.0
Lj4A737G58 Lonicera japonica HOM05D003319 ORTHO05D003739 1.1e-53 215.3 375 44.0
MELO3C003521.2 Cucumis melo HOM05D003319 ORTHO05D003739 2.5e-53 214.2 384 43.5
vmacro04648 Vaccinium macrocarpon HOM05D003319 ORTHO05D003739 2.7e-52 210.7 414 39.1
Prupe.1G532700 Prunus persica HOM05D003319 ORTHO05D003739 7.9e-52 209.1 461 38.2
Rhsim07G0212100 Rhododendron simsii HOM05D003319 ORTHO05D003739 1.0e-51 208.8 437 38.0
Sc26g0002970 Simmondsia chinensis HOM05D003319 ORTHO05D003739 1.0e-51 208.8 412 40.8
TWI36G0459 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 1.8e-51 208.0 512 37.3
Hma1.2p1_0010F.1_g006630 Hydrangea macrophylla HOM05D003319 ORTHO05D003739 6.7e-51 206.1 376 42.3
Manes.02G144600 Manihot esculenta HOM05D003319 ORTHO05D003739 2.0e-50 204.5 502 35.9
Gohir.D01G114100 Gossypium hirsutum HOM05D003319 ORTHO05D003739 3.3e-50 203.8 508 36.0
Nn1g05581 Nelumbo nucifera HOM05D003319 ORTHO05D003739 1.7e-49 201.4 301 44.2
CsaV3_3G048000 Cucumis sativus L. HOM05D003319 ORTHO05D003739 6.3e-49 199.5 284 44.4
Gorai.002G139000 Gossypium raimondii HOM05D003319 ORTHO05D003739 6.3e-49 199.5 510 35.1
TWI56G0998 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 1.4e-48 198.4 515 36.7
Gohir.A01G126500 Gossypium hirsutum HOM05D003319 ORTHO05D003739 3.1e-48 197.2 508 35.0
Thecc.08G071400 Theobroma cacao HOM05D003319 ORTHO05D003739 3.1e-48 197.2 521 37.4
TAR628G1108 Trochodendron aralioides HOM05D003319 ORTHO05D003739 3.1e-48 197.2 510 35.9
Cpa.g.sc21.26 Carica papaya HOM05D003319 ORTHO05D003739 2.6e-47 194.1 408 38.7
Sabra02G0083800 Salix brachista HOM05D003319 ORTHO05D003739 3.4e-47 193.7 380 40.0
Solyc12g087970.2 Solanum lycopersicum HOM05D003319 ORTHO05D003739 3.4e-47 193.7 279 44.1
TAR376G1177 Trochodendron aralioides HOM05D003319 ORTHO05D003739 4.5e-47 193.4 445 35.7
Cc10_g15920 Coffea canephora HOM05D003319 ORTHO05D003739 1.0e-46 192.2 402 40.8
Potri.002G106500 Populus trichocarpa HOM05D003319 ORTHO05D003739 1.3e-46 191.8 570 32.5
PGR042G0823 Punica granatum HOM05D003319 ORTHO05D003739 1.7e-46 191.4 381 40.4
Sed0024254 Sechium edule HOM05D003319 ORTHO05D003739 1.9e-45 188.0 368 40.5
Nitab4.5_0000354g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 5.5e-45 186.4 503 33.8
Nitab4.5_0001607g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 4.7e-44 183.3 466 35.4
Nitab4.5_0000131g0210 Nicotiana tabacum HOM05D003319 ORTHO05D003739 7.9e-44 182.6 475 35.4
ECA232G2539 Erigeron canadensis HOM05D001083 ORTHO05D001637 2.3e-43 181.0 385 41.0
PGR031G0455 Punica granatum HOM05D003319 ORTHO05D003739 3.9e-43 180.3 398 36.9
Duzib093G0230 Durio zibethinus HOM05D003319 ORTHO05D003739 6.7e-43 179.5 169 56.8
Hund17284 Selenicereus undatus HOM05D003319 ORTHO05D003739 1.5e-42 178.3 298 40.6
Lsat_1_v5_gn_9_74001 Lactuca sativa HOM05D003319 ORTHO05D003739 4.4e-42 176.8 417 37.9
Sopen12g030000 Solanum pennellii HOM05D003319 ORTHO05D003739 7.4e-42 176.0 418 36.1
CAN.G806.11 Capsicum annuum HOM05D003319 ORTHO05D003739 1.3e-41 175.3 356 37.9
Nitab4.5_0005913g0020 Nicotiana tabacum HOM05D003319 ORTHO05D003739 2.2e-41 174.5 486 33.5
Duzib041G0541 Durio zibethinus HOM05D003319 ORTHO05D003739 2.8e-41 174.1 550 32.7
CDE11G0791 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 6.3e-41 172.9 282 40.8
PSO170G3999 Papaver somniferum HOM05D003319 ORTHO05D003739 1.8e-40 171.4 317 41.0
PSO210G3859 Papaver somniferum HOM05D003319 ORTHO05D003739 7.0e-40 169.5 317 40.4
CDE05G3064 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 3.5e-39 167.2 452 34.5
Peaxi162Scf00160g01038 Petunia axillaris HOM05D003319 ORTHO05D003739 3.5e-39 167.2 403 37.5
Peaxi162Scf00454g00323 Petunia axillaris HOM05D003319 ORTHO05D003739 3.5e-39 167.2 487 32.2
MD08G1198900 Malus domestica HOM05D003319 ORTHO05D003739 4.5e-39 166.8 529 32.7
Hund04947 Selenicereus undatus HOM05D003319 ORTHO05D003739 1.0e-38 165.6 370 37.3
COL.COLO4_35252 Corchorus olitorius HOM05D001049 ORTHO05D001986 8.5e-38 162.5 171 56.7
DCAR_012853 Daucus carota HOM05D003319 ORTHO05D003739 1.5e-37 161.8 187 52.9
CAN.G193.10 Capsicum annuum HOM05D003319 ORTHO05D003739 2.5e-37 161.0 166 53.0
MBI16_g19592_MAGBIO Magnolia biondii HOM05D003319 ORTHO05D003739 3.2e-37 160.6 491 33.8
ATR0582G130 Amborella trichopoda HOM05D003319 ORTHO05D003739 4.2e-37 160.2 529 31.6
FAN13G1335 Fragaria x ananassa HOM05D003319 ORTHO05D003739 6.1e-36 156.4 359 40.4
FvH4_5g34820 Fragaria vesca HOM05D003319 ORTHO05D003739 8.0e-36 156.0 360 41.1
MSTRG.11807 Avicennia marina HOM05D003319 ORTHO05D003739 1.8e-35 154.8 522 30.8
HanXRQChr05g0163341 Helianthus annuus HOM05D003319 ORTHO05D003739 1.8e-35 154.8 328 40.2
HanXRQChr15g0484821 Helianthus annuus HOM05D003319 ORTHO05D003739 2.3e-35 154.5 380 37.6
RcHm_v2.0_Chr7g0235501 Rosa chinensis HOM05D003319 ORTHO05D003739 3.0e-35 154.1 466 33.9
Glyma.04G095300 Glycine max HOM05D003319 ORTHO05D003739 5.7e-34 149.8 291 36.8
FAN04G1055 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.3e-33 148.7 429 38.7
ECA246G1786 Erigeron canadensis HOM05D003319 ORTHO05D003739 6.3e-33 146.4 369 33.9
Dinv44863 Davidia involucrata HOM05D001049 ORTHO05D001986 1.8e-32 144.8 130 58.5
Lsat_1_v5_gn_6_104940 Lactuca sativa HOM05D003319 ORTHO05D003739 5.3e-32 143.3 379 35.9
CAN.G475.23 Capsicum annuum HOM05D003319 ORTHO05D003739 9.1e-32 142.5 411 33.3
Solyc04g076360.4 Solanum lycopersicum HOM05D003319 ORTHO05D003739 9.1e-32 142.5 451 33.0
THA.LOC104816794 Tarenaya hassleriana HOM05D003319 ORTHO05D003739 1.2e-31 142.1 468 30.3
Sopen00g008100 Solanum pennellii HOM05D003319 ORTHO05D003739 2.0e-31 141.4 167 48.5
SalBow4G2315 Salvia bowleyana HOM05D003319 ORTHO05D003739 4.5e-31 140.2 489 31.9
Aa31LG1G5280 Aethionema arabicum HOM05D003319 ORTHO05D003739 5.9e-31 139.8 477 32.5
arahy.Tifrunner.gnm1.ann1.53Z6YZ Arachis hypogaea HOM05D003319 ORTHO05D003739 7.7e-31 139.4 283 37.1
Migut.A00432 Erythranthe guttata HOM05D003319 ORTHO05D003739 7.7e-31 139.4 298 38.3
Phvul.009G036300 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 7.7e-31 139.4 312 33.3
Sp1g08300 Schrenkiella parvula HOM05D003319 ORTHO05D003739 7.7e-31 139.4 168 48.2
Oeu018565.2 Olea europaea HOM05D003319 ORTHO05D003739 1.7e-30 138.3 403 32.8
HPP92_016140 Vanilla planifolia HOM05D003319 ORTHO05D003739 2.9e-30 137.5 369 32.0
Psat5g049040 Pisum sativum HOM05D003319 ORTHO05D003739 5.0e-30 136.7 286 37.8
Aqoxy5G01378 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 8.5e-30 136.0 431 32.5
Medtr8g024690 Medicago truncatula HOM05D003319 ORTHO05D003739 7.2e-29 132.9 175 44.0
SGA_v2.0_scaffold193G40665 Striga asiatica HOM05D003319 ORTHO05D003739 7.2e-29 132.9 387 32.3
CARHR009680 Cardamine hirsuta HOM05D003319 ORTHO05D003739 1.2e-28 132.1 168 44.6
Glyma.06G097100 Glycine max HOM05D003319 ORTHO05D003739 6.1e-28 129.8 490 29.6
Sp2g05390 Schrenkiella parvula HOM05D003319 ORTHO05D003739 1.4e-27 128.6 279 37.3
VMungo1309G1101 Vigna mungo HOM05D003319 ORTHO05D003739 1.4e-27 128.6 511 27.6
Ca_23436_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 3.0e-27 127.5 171 45.6
CSS0018207 Camellia sinensis var. sinensis HOM05D003319 ORTHO05D003739 4.0e-27 127.1 130 55.4
FAN08G0387 Fragaria x ananassa HOM05D003319 ORTHO05D003739 5.2e-27 126.7 463 28.9
EL10Ac1g00993 Beta vulgaris HOM05D003319 ORTHO05D003739 6.8e-27 126.3 483 33.1
Aqoxy5G01379 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 8.8e-27 125.9 418 31.6
CARHR053790 Cardamine hirsuta HOM05D003319 ORTHO05D003739 1.2e-26 125.6 280 35.7
Actinidia19627 Actinidia chinensis HOM05D003319 ORTHO05D003739 1.5e-26 125.2 293 38.6
AT1G58220 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 2.0e-26 124.8 283 35.7
Carub.0001s0905 Capsella rubella HOM05D003319 ORTHO05D003739 4.4e-26 123.6 138 49.3
Thhalv10024079m.g Eutrema salsugineum HOM05D003319 ORTHO05D003739 4.4e-26 123.6 283 35.0
PGSC0003DMG400009342 Solanum tuberosum HOM05D003319 ORTHO05D003739 9.8e-26 122.5 418 31.8
AUR62019092 Chenopodium quinoa HOM05D003319 ORTHO05D003739 3.7e-25 120.6 453 29.6
PSO478G0452 Papaver somniferum HOM05D003319 ORTHO05D003739 1.1e-24 119.0 305 37.0
Carub.0002s0638 Capsella rubella HOM05D003319 ORTHO05D003739 1.8e-24 118.2 280 34.6
Migut.F01437 Erythranthe guttata HOM05D003319 ORTHO05D003739 1.8e-24 118.2 451 29.9
AUR62014349 Chenopodium quinoa HOM05D003319 ORTHO05D003739 5.4e-24 116.7 453 29.8
AT1G09710 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 7.0e-24 116.3 457 29.1
Ca_29526_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 1.6e-23 115.2 192 40.6
FAN18G0012 Fragaria x ananassa HOM05D003319 ORTHO05D003739 4.5e-23 113.6 428 29.9
unitig_32.g10947 Utricularia gibba HOM05D003319 ORTHO05D003739 7.7e-23 112.8 409 29.8
Medtr3g100180 Medicago truncatula HOM05D003319 ORTHO05D003739 1.0e-22 112.5 318 34.6
Sabra05G0119500 Salix brachista HOM05D003319 ORTHO05D003739 1.0e-22 112.5 619 25.2
AL1G20260 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 1.7e-22 111.7 472 29.4
AL2G18190 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 2.2e-22 111.3 278 34.5
TPR.G6339 Trifolium pratense HOM05D003319 ORTHO05D003739 2.9e-22 110.9 185 41.1
DCAR_019315 Daucus carota HOM05D003319 ORTHO05D003739 1.9e-21 108.2 594 26.8
Aa31LG2G10920 Aethionema arabicum HOM05D003319 ORTHO05D003739 3.2e-21 107.5 284 33.5
Actinidia19629 Actinidia chinensis HOM05D003319 ORTHO05D003739 4.2e-21 107.1 169 42.6
BcaC09g49499 Brassica carinata HOM05D003319 ORTHO05D003739 4.2e-21 107.1 295 32.9
A01p28300 Brassica napus HOM05D003319 ORTHO05D003739 4.2e-21 107.1 295 32.9
C01p35850 Brassica napus HOM05D003319 ORTHO05D003739 4.2e-21 107.1 295 32.9
BolC1t03546H Brassica oleracea HOM05D003319 ORTHO05D003739 4.2e-21 107.1 295 32.9
BraA01t02959Z Brassica rapa HOM05D003319 ORTHO05D003739 4.2e-21 107.1 295 32.9
MD15G1386000 Malus domestica HOM05D003319 ORTHO05D003739 5.5e-21 106.7 135 47.4
Lj1g0027025 Lotus japonicus HOM05D003319 ORTHO05D003739 1.2e-20 105.5 497 27.8
PSO478G3694 Papaver somniferum HOM05D003319 ORTHO05D003739 1.6e-20 105.1 158 44.9
BolC9t55230H Brassica oleracea HOM05D003319 ORTHO05D003739 2.1e-20 104.8 324 30.9
SHI20380 Sapria himalayana HOM05D003319 ORTHO05D003739 2.7e-20 104.4 129 46.5
BcaC04g22121 Brassica carinata HOM05D003319 ORTHO05D003739 3.6e-20 104.0 327 31.5
BraA09t37477Z Brassica rapa HOM05D003319 ORTHO05D003739 6.1e-20 103.2 293 30.7
C09p23120 Brassica napus HOM05D003319 ORTHO05D003739 8.0e-20 102.8 331 30.8
Phvul.008G182100 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 1.0e-19 102.4 147 40.8
Lalb_Chr08g0242551 Lupinus albus HOM05D003319 ORTHO05D003739 2.3e-19 101.3 388 29.1
PSO478G0048 Papaver somniferum HOM05D003319 ORTHO05D003739 2.3e-19 101.3 412 30.1
A09p18510 Brassica napus HOM05D003319 ORTHO05D003739 3.0e-19 100.9 299 30.8
BcaB04g20193 Brassica carinata HOM05D003319 ORTHO05D003739 6.8e-19 99.8 293 30.7
PSO478G2921 Papaver somniferum HOM05D003319 ORTHO05D003739 6.8e-19 99.8 372 33.6
SEGI_24455 Sequoiadendron giganteum HOM05D003319 ORTHO05D003739 2.0e-18 98.2 625 25.8
BolC5t29530H Brassica oleracea HOM05D003319 ORTHO05D003739 1.3e-17 95.5 462 29.2
C05p07790 Brassica napus HOM05D003319 ORTHO05D003739 1.7e-17 95.1 463 29.8
PSO782G3079 Papaver somniferum HOM05D003319 ORTHO05D003739 1.7e-17 95.1 155 44.5
Glyma.02G214600 Glycine max HOM05D003319 ORTHO05D003739 2.2e-17 94.7 129 40.3
Hma1.2p1_0616F.1_g189970 Hydrangea macrophylla HOM05D003319 ORTHO05D003739 2.2e-17 94.7 70 65.7
Lalb_Chr11g0064951 Lupinus albus HOM05D003319 ORTHO05D003739 8.3e-17 92.8 508 27.0
arahy.Tifrunner.gnm1.ann1.J3DRUP Arachis hypogaea HOM05D003319 ORTHO05D003739 1.1e-16 92.4 378 28.0
MD15G1385800 Malus domestica HOM05D003319 ORTHO05D003739 1.8e-16 91.7 348 30.2
Lj4A88T36 Lonicera japonica HOM05D003319 ORTHO05D003739 4.1e-16 90.5 132 40.9
arahy.Tifrunner.gnm1.ann1.S3SE83 Arachis hypogaea HOM05D003319 ORTHO05D003739 5.4e-16 90.1 325 29.2
Lalb_Chr23g0270031 Lupinus albus HOM05D003319 ORTHO05D003739 7.0e-16 89.7 468 27.1
arahy.Tifrunner.gnm1.ann1.ET429J Arachis hypogaea HOM05D003319 ORTHO05D003739 1.0e-14 85.9 598 24.2
Mapoly0014s0193 Marchantia polymorpha HOM05D003319 ORTHO05D003739 1.0e-14 85.9 89 48.3
A06p06390 Brassica napus HOM05D003319 ORTHO05D003739 2.9e-14 84.3 466 29.2
Os02g0551400 Oryza sativa ssp. japonica HOM05D003319 ORTHO05D003739 5.0e-14 83.6 345 27.0
BraA06t23850Z Brassica rapa HOM05D003319 ORTHO05D003739 2.5e-13 81.3 467 26.3
CBR_g9135 Chara braunii HOM05D003319 ORTHO05D003739 4.2e-13 80.5 136 36.8
Zm00001eb243450 Zea mays HOM05D003319 ORTHO05D003739 7.2e-13 79.7 367 28.6
AUR62002401 Chenopodium quinoa HOM05D003319 ORTHO05D003739 3.6e-12 77.4 362 27.9
TPR.G35908 Trifolium pratense HOM05D003319 ORTHO05D003739 1.4e-11 75.5 144 40.3
SHI20376 Sapria himalayana HOM05D003319 ORTHO05D003739 3.0e-11 74.3 195 31.8
Psat2g065280 Pisum sativum HOM05D003319 ORTHO05D003739 4.0e-11 73.9 127 40.2
Zm00001eb181960 Zea mays HOM05D003319 ORTHO05D003739 6.8e-11 73.2 337 32.6
Pp3c8_16730 Physcomitrium patens HOM05D003319 ORTHO05D003739 8.9e-11 72.8 55 58.2
VMungo0647G1715 Vigna mungo HOM05D003319 ORTHO05D003739 4.4e-10 70.5 133 39.1
EL10Ac3g06093 Beta vulgaris HOM05D003319 ORTHO05D003739 5.4e-08 63.5 454 25.6
Lj4A717T32 Lonicera japonica HOM05D003319 ORTHO05D003739 7.0e-08 63.2 92 45.7
AUR62023790 Chenopodium quinoa HOM05D003319 ORTHO05D003739 7.8e-07 59.7 322 27.3


User provided reference genes

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