Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 8.1e-285 983.0 484 100.0
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 1.5e-267 925.6 484 92.4
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 1.5e-267 925.6 484 92.4
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 2.9e-266 921.4 484 91.7
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 1.5e-238 829.3 486 84.0
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 4.1e-236 821.2 484 83.9
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 2.6e-235 818.5 484 83.5
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 4.5e-235 817.8 483 82.2
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 1.6e-232 809.3 484 81.4
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 2.1e-232 808.9 484 82.6
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 2.7e-232 808.5 483 81.6
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 2.7e-232 808.5 484 82.2
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 4.7e-232 807.7 484 82.0
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 6.1e-232 807.4 484 83.1
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 1.8e-231 805.8 484 81.4
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 1.8e-231 805.8 483 81.4
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 1.8e-231 805.8 485 81.2
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 1.8e-231 805.8 484 81.6
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 2.3e-231 805.4 483 82.4
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 6.7e-231 803.9 484 81.4
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 8.8e-231 803.5 484 81.0
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 8.8e-231 803.5 484 81.0
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 8.8e-231 803.5 483 81.6
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 1.2e-230 803.1 484 81.2
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 2.0e-230 802.4 483 80.7
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 2.0e-230 802.4 484 82.4
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 3.3e-230 801.6 484 81.8
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 3.3e-230 801.6 483 80.7
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 7.5e-230 800.4 484 81.4
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 2.8e-229 798.5 484 80.6
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 2.8e-229 798.5 484 81.2
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 3.7e-229 798.1 485 80.0
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.7e-229 798.1 484 81.0
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.8e-229 797.7 484 81.0
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 8.2e-229 797.0 484 81.4
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 8.2e-229 797.0 484 81.0
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 8.2e-229 797.0 484 80.8
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.1e-228 796.6 484 81.0
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 1.4e-228 796.2 484 80.8
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 2.4e-228 795.4 485 80.4
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 4.1e-228 794.7 464 83.6
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 9.1e-228 793.5 484 80.4
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 1.2e-227 793.1 484 80.8
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 1.6e-227 792.7 484 80.6
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 5.9e-227 790.8 484 81.0
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.0e-226 790.0 484 80.8
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 2.2e-226 788.9 484 79.8
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 2.2e-226 788.9 486 80.0
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 8.5e-226 786.9 484 81.0
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 3.2e-225 785.0 484 80.4
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 3.2e-225 785.0 484 78.9
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 5.5e-225 784.3 484 79.8
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 7.2e-225 783.9 484 80.2
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 7.2e-225 783.9 484 80.2
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 9.4e-225 783.5 483 80.1
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 1.6e-224 782.7 484 79.8
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 2.1e-224 782.3 485 79.6
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 6.1e-224 780.8 490 78.8
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 1.8e-223 779.2 484 79.5
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 4.0e-223 778.1 486 78.8
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 6.8e-223 777.3 490 78.6
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 2.6e-222 775.4 487 78.4
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 5.7e-222 774.2 485 79.0
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 7.5e-222 773.9 515 75.5
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 9.8e-222 773.5 485 78.1
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 1.3e-221 773.1 485 78.8
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 2.8e-221 771.9 484 78.5
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 4.8e-221 771.2 487 78.0
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 6.3e-221 770.8 486 79.0
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 1.1e-220 770.0 486 78.4
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 2.4e-220 768.8 483 78.1
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 3.1e-220 768.5 485 77.9
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 4.1e-220 768.1 489 78.5
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 7.0e-220 767.3 485 77.7
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 2.7e-219 765.4 486 78.0
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 1.7e-218 762.7 484 77.7
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 2.3e-218 762.3 485 78.6
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.9e-218 761.9 485 78.4
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 3.8e-218 761.5 485 78.4
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 6.5e-218 760.8 485 78.1
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 7.2e-217 757.3 484 77.7
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.6e-216 756.1 411 87.1
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 8.0e-216 753.8 491 76.6
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.0e-215 753.4 484 76.4
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 1.0e-215 753.4 484 76.9
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.5e-214 749.6 489 76.9
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.5e-214 749.6 489 76.9
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 2.0e-214 749.2 483 75.6
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 7.5e-214 747.3 485 76.7
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 2.9e-210 735.3 485 76.1
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 2.5e-209 732.3 483 76.0
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 3.3e-209 731.9 486 75.5
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 5.6e-209 731.1 482 75.9
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 1.6e-208 729.6 485 75.5
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 2.1e-208 729.2 483 75.4
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 2.1e-208 729.2 487 76.2
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 6.1e-208 727.6 483 75.8
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 1.4e-207 726.5 393 87.0
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 4.7e-200 701.4 414 81.9
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 2.4e-196 689.1 423 76.4
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 1.2e-195 686.8 444 76.6
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 1.5e-193 679.9 433 75.5
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 9.5e-193 677.2 424 73.6
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 8.9e-191 670.6 404 78.2
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 1.2e-190 670.2 389 79.4
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 1.7e-189 666.4 483 70.8
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 6.4e-181 637.9 384 81.5
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 3.1e-175 619.0 406 71.7
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.3e-169 598.6 432 72.0
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 7.6e-166 587.8 480 63.8
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 9.9e-166 587.4 388 68.3
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 1.0e-162 577.4 398 65.8
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 2.4e-156 556.2 289 91.3
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 3.2e-156 555.8 289 91.7
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.1e-140 504.2 345 74.2
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 4.3e-137 492.3 271 84.9
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.2e-104 383.6 237 78.5
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.1e-100 371.3 273 70.3
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.5e-81 307.8 171 83.6
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.0e-61 241.9 196 61.7
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 3.9e-61 240.0 130 86.2
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.8e-58 231.1 136 79.4
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.4e-58 230.7 135 80.7
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 1.3e-48 198.4 140 72.9
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 5.6e-44 183.0 158 62.0
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 1.6e-35 154.8 94 78.7
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 3.2e-31 140.6 105 65.7
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 7.9e-14 82.8 59 66.1
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.1e-10 72.4 286 26.2
Gohir.D09G184900 Gossypium hirsutum HOM05D000776 ORTHO05D001624 7.0e-10 69.7 354 25.4
Gorai.006G207400 Gossypium raimondii HOM05D000776 ORTHO05D001624 9.1e-10 69.3 354 25.4
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 1.1e-07 62.4 127 32.3
SEGI_37678 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 1.5e-07 62.0 154 29.2
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 2.5e-07 61.2 134 29.9
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 1.2e-06 58.9 150 28.0
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 2.1e-06 58.2 156 28.8
Haze_27503 Corylus avellana HOM05D000776 ORTHO05D002281 2.1e-06 58.2 165 29.1
CSS0022914 Camellia sinensis var. sinensis HOM05D000776 ORTHO05D001624 3.6e-06 57.4 180 27.8
HanXRQChr06g0165501 Helianthus annuus HOM05D000776 ORTHO05D001624 4.7e-06 57.0 165 27.3
Pp3c14_11550 Physcomitrium patens HOM05D000776 ORTHO05D002281 4.7e-06 57.0 185 29.7


User provided reference genes

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