Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 4427.5 2421 100.0
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 3975.6 2424 91.5
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 3450.6 2459 80.7
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 3264.6 2462 77.3
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 2081.6 1675 74.6
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2070.0 2515 55.6
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2058.5 2523 55.1
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1983.8 2497 53.7
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1968.7 2526 53.4
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1942.2 2525 52.8
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1917.1 2488 52.2
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1905.2 2492 52.6
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1889.0 2498 52.0
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1870.9 2487 51.9
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1860.9 2496 51.5
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1859.0 2551 51.6
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1853.2 2513 51.7
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1851.3 2552 51.4
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1847.4 2493 51.8
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1833.2 2553 51.2
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1825.8 2548 51.2
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1803.5 2454 52.1
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1798.5 2497 50.3
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1793.5 2479 51.2
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1792.7 2505 50.7
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1787.7 2517 50.2
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1782.3 2502 50.4
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1771.9 2502 50.4
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1768.4 2503 51.5
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1756.1 2494 50.2
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1753.4 2505 50.1
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1746.9 2479 49.5
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1725.3 2483 49.5
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1701.0 2532 48.1
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1696.8 2498 48.8
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1680.6 2532 48.1
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1673.3 2515 50.0
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1672.9 2500 48.6
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1654.0 2504 49.1
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1652.9 2519 49.7
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1652.5 2470 49.2
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1651.0 2491 47.9
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1649.4 2504 49.1
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1647.1 2512 48.4
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1644.0 2505 47.8
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1636.3 2458 48.7
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1631.3 2484 48.5
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1615.5 2482 48.9
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1606.3 2520 47.1
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1594.3 2484 48.5
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1583.9 2480 48.3
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1553.5 2486 47.5
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1550.8 2506 46.3
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1543.9 2192 50.7
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1533.5 2505 46.3
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1528.1 2489 46.1
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1527.7 2526 47.4
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1525.8 2300 48.5
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1523.5 2550 46.9
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1517.7 2542 44.7
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1514.6 2458 46.7
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1511.1 2501 46.3
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1496.9 2484 47.1
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1496.1 2470 46.8
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1493.0 2504 46.8
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1482.6 2498 45.5
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1459.5 2026 51.5
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1457.6 2631 42.8
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1454.1 2534 43.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1453.3 2497 44.6
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1441.8 2479 44.7
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1441.0 2513 43.8
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1419.8 2472 45.5
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1416.7 2494 44.0
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1410.6 2385 45.8
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1385.2 2429 42.9
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1374.8 2475 44.7
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1347.4 2377 43.1
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1298.1 2469 42.7
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1298.1 1872 49.5
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1295.0 2496 42.2
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1284.2 2483 42.4
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1258.0 2598 39.3
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1241.1 2518 40.1
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1240.3 2497 42.3
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1225.7 2603 39.5
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1218.0 2486 40.8
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1211.1 2498 41.5
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1179.9 2519 39.3
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1126.7 2503 40.0
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1119.8 2452 40.0
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1088.2 2484 40.3
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1080.1 2465 39.5
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 3.7e-301 1039.6 2489 39.4
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 7.1e-297 1025.4 2584 37.9
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 2.6e-291 1006.9 2487 37.5
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 1.6e-288 997.7 2437 38.5
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 3.7e-285 986.5 2438 38.6
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 1.1e-281 974.9 2481 37.4
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 5.1e-271 939.5 1261 49.6
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 2.6e-262 910.6 2415 36.8
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 3.5e-251 873.6 2400 36.5
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.7e-243 847.4 1751 39.7
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.3e-237 828.6 968 52.8
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 2.8e-224 784.3 2493 35.8
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 2.2e-213 748.0 2721 34.3
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 6.0e-211 740.0 1053 51.6
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 7.6e-198 696.4 2417 34.3
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.6e-190 671.4 714 58.4
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.2e-182 646.0 2405 33.9
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.2e-182 646.0 2405 33.9
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 4.5e-182 644.0 2412 34.0
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 1.3e-181 642.5 908 50.3
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 2.2e-181 641.7 2413 34.0
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 4.6e-179 634.0 1030 50.9
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.1e-177 629.4 2443 33.5
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.5e-169 602.4 1927 36.2
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.8e-162 578.9 1800 33.1
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 5.9e-158 563.9 574 61.0
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.7e-157 562.4 913 45.6
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.2e-157 562.0 2545 32.1
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.8e-154 552.4 942 47.5
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 3.6e-123 448.4 936 38.8
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 5.2e-122 444.5 443 56.7
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 7.8e-118 430.6 502 51.4
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 3.9e-117 428.3 711 43.2
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.3e-109 403.3 671 46.6
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 4.1e-95 355.1 1799 30.4
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.7e-93 349.7 1401 33.8
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 9.6e-92 344.0 1233 31.6
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 4.4e-89 335.1 2935 27.6
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.1e-82 312.4 2775 28.4
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 7.4e-76 291.2 298 54.7
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.0e-64 254.2 2787 27.1
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 2.5e-60 239.6 252 55.6
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 1.8e-58 233.4 252 54.8
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 3.6e-54 219.2 976 28.1
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.3e-52 212.2 2763 26.0
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.3e-51 210.7 1020 33.4
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 3.4e-49 202.6 561 34.9
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 6.7e-45 188.3 220 55.5
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 3.1e-42 179.5 303 43.6
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 3.8e-40 172.6 555 31.7
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 3.2e-39 169.5 442 34.8
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.7e-35 157.1 2403 25.1
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 5.7e-28 132.1 212 45.8
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.1e-26 127.9 166 50.6
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.0e-24 121.3 265 34.0
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.6e-22 114.0 243 39.5
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 2.6e-20 106.7 2129 26.8
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 2.7e-17 96.7 71 73.2
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 1.7e-16 94.0 313 29.7
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 3.0e-13 83.2 70 67.1
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 3.0e-13 83.2 70 67.1
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 6.3e-11 75.5 120 40.8
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.8e-10 73.9 146 37.7
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.9e-09 68.9 178 34.8
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 8.6e-08 65.1 137 34.3


User provided reference genes

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