Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 7.1e-75 283.9 147 100.0
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 9.1e-38 160.6 147 65.3
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.0e-37 159.5 149 67.8
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.2e-34 150.2 148 64.2
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 2.4e-22 109.4 120 59.2
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 7.5e-16 87.8 146 43.2
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.3e-15 87.0 134 44.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 2.2e-15 86.3 64 71.9
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.1e-14 84.0 131 45.8
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.4e-14 83.6 152 42.1
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.4e-14 82.8 69 66.7
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 3.1e-14 82.4 111 43.2
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 9.2e-14 80.9 143 42.0
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 2.7e-13 79.3 59 66.1
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.5e-13 79.0 129 40.3
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 3.5e-13 79.0 142 43.7
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 3.5e-13 79.0 58 70.7
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.3e-12 77.0 56 66.1
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.3e-12 76.3 140 39.3
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 2.3e-12 76.3 131 38.2
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.9e-12 75.9 129 38.8
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 3.8e-12 75.5 137 40.1
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 6.6e-12 74.7 137 41.6
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.6e-12 74.3 130 41.5
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.1e-11 73.9 55 70.9
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.1e-11 73.9 138 42.0
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.1e-11 73.9 141 39.0
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.1e-11 73.9 144 37.5
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.9e-11 73.2 102 41.2
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.9e-11 73.2 119 42.0
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 2.5e-11 72.8 146 39.0
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 3.3e-11 72.4 136 39.7
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.3e-11 72.0 140 37.9
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.6e-11 71.6 138 41.3
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 5.6e-11 71.6 158 36.1
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 7.3e-11 71.2 130 37.7
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 7.3e-11 71.2 135 41.5
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.2e-10 70.5 59 64.4
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 1.6e-10 70.1 63 66.7
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.6e-10 70.1 144 36.8
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 2.8e-10 69.3 153 36.6
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 3.6e-10 68.9 105 38.1
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.6e-10 68.9 143 35.7
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 3.6e-10 68.9 62 62.9
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.0e-10 67.8 130 36.9
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.0e-10 67.8 141 39.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.0e-09 67.4 135 40.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.4e-09 67.0 131 37.4
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-09 67.0 135 40.0
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.8e-09 66.6 66 57.6
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.3e-09 66.2 127 40.9
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 3.1e-09 65.9 130 39.2
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 5.2e-09 65.1 52 65.4
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.8e-09 64.7 126 39.7
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 8.9e-09 64.3 135 39.3
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 8.9e-09 64.3 148 35.8
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 1.2e-08 63.9 52 65.4
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 2.0e-08 63.2 52 65.4
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 2.6e-08 62.8 138 35.5
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 2.6e-08 62.8 138 35.5
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 2.6e-08 62.8 56 66.1
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.4e-08 62.4 145 36.6
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 4.4e-08 62.0 137 35.8
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 5.8e-08 61.6 55 58.2
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 5.8e-08 61.6 139 36.0
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 5.8e-08 61.6 121 35.5
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 5.8e-08 61.6 50 64.0
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 7.5e-08 61.2 131 36.6
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 7.5e-08 61.2 47 70.2
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.5e-08 61.2 135 38.5
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 7.5e-08 61.2 45 68.9
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 7.5e-08 61.2 63 54.0
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 7.5e-08 61.2 138 34.8
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.8e-08 60.8 52 63.5
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 1.3e-07 60.5 65 56.9
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.3e-07 60.5 138 34.8
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.3e-07 60.5 138 34.8
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.3e-07 60.5 52 63.5
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.3e-07 60.5 139 37.4
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.3e-07 60.5 52 63.5
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.3e-07 60.5 143 37.8
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 1.7e-07 60.1 112 40.2
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 1.7e-07 60.1 127 37.8
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 2.2e-07 59.7 58 58.6
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 2.2e-07 59.7 61 55.7
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.2e-07 59.7 122 39.3
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 2.9e-07 59.3 60 55.0
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 2.9e-07 59.3 65 52.3
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 4.9e-07 58.5 130 35.4
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 4.9e-07 58.5 85 48.2
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 4.9e-07 58.5 61 55.7
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 6.4e-07 58.2 135 37.8
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 6.4e-07 58.2 135 28.9
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 8.3e-07 57.8 52 63.5
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 8.3e-07 57.8 119 37.8
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 1.1e-06 57.4 101 39.6
Migut.J01657 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.1e-06 57.4 129 34.1
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 1.1e-06 57.4 52 61.5
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.1e-06 57.4 52 61.5
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.1e-06 57.4 52 59.6
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 1.4e-06 57.0 47 63.8
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 1.4e-06 57.0 110 40.0
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 1.4e-06 57.0 46 67.4
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 1.4e-06 57.0 62 53.2
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 123 38.2
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 1.9e-06 56.6 52 61.5
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 1.9e-06 56.6 47 63.8
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 1.9e-06 56.6 43 65.1
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 1.9e-06 56.6 129 35.7
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 1.9e-06 56.6 52 61.5
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 1.9e-06 56.6 47 63.8
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.9e-06 56.6 41 68.3
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.9e-06 56.6 113 37.2
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 2.4e-06 56.2 49 63.3
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 2.4e-06 56.2 47 61.7
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.4e-06 56.2 129 34.9
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 2.4e-06 56.2 134 35.1
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 3.2e-06 55.8 42 71.4
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.2e-06 55.8 128 34.4
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 3.2e-06 55.8 133 33.8
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.1e-06 55.5 126 35.7
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 4.1e-06 55.5 50 58.0
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 4.1e-06 55.5 47 59.6
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 5.4e-06 55.1 44 63.6
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 5.4e-06 55.1 133 34.6
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 5.4e-06 55.1 47 59.6
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 7.0e-06 54.7 43 65.1
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 7.0e-06 54.7 47 61.7
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 7.0e-06 54.7 87 41.4
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 7.0e-06 54.7 87 41.4
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 7.0e-06 54.7 46 63.0
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 7.0e-06 54.7 115 40.0
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 7.0e-06 54.7 115 40.0
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 7.0e-06 54.7 52 55.8
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 9.2e-06 54.3 50 62.0
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 9.2e-06 54.3 43 65.1
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 9.2e-06 54.3 43 65.1
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 9.2e-06 54.3 43 65.1
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 9.2e-06 54.3 48 58.3
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 9.2e-06 54.3 48 58.3
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 9.2e-06 54.3 44 63.6
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 9.2e-06 54.3 44 63.6
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 9.2e-06 54.3 62 51.6


User provided reference genes

Program Settings