Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 3.8e-122 441.4 210 100.0
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 4.0e-111 404.8 210 90.5
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 7.5e-110 400.6 210 88.6
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 9.8e-102 373.6 209 81.8
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 1.7e-101 372.9 208 82.2
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 4.1e-100 368.2 208 80.3
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 1.2e-99 366.7 209 80.9
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 2.0e-99 365.9 208 78.4
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.7e-99 365.5 208 79.8
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 5.9e-99 364.4 208 79.8
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 7.7e-99 364.0 208 78.8
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 1.7e-98 362.8 208 80.8
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.7e-98 362.8 208 79.3
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 6.6e-98 360.9 208 79.8
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 6.6e-98 360.9 208 79.3
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 6.6e-98 360.9 201 81.1
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 8.6e-98 360.5 206 80.6
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 1.1e-97 360.1 208 80.3
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.1e-97 360.1 208 79.8
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 1.5e-97 359.8 208 79.3
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.5e-97 359.8 208 80.8
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.5e-97 359.8 208 79.8
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 3.3e-97 358.6 208 78.4
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 4.2e-97 358.2 208 80.3
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 5.5e-97 357.8 208 79.3
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 5.5e-97 357.8 210 79.5
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 7.2e-97 357.5 208 76.0
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 9.5e-97 357.1 208 77.4
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 9.5e-97 357.1 208 79.8
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 9.5e-97 357.1 208 78.8
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.2e-96 356.7 208 76.9
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 1.2e-96 356.7 208 77.9
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.6e-96 356.3 208 76.0
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.6e-96 356.3 209 79.9
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.6e-96 356.3 208 78.8
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.6e-96 356.3 208 78.4
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.1e-96 355.9 198 81.8
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 2.1e-96 355.9 208 80.3
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 2.1e-96 355.9 208 79.3
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 2.1e-96 355.9 208 79.3
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.8e-96 355.5 208 78.8
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.8e-96 355.5 209 78.0
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 2.8e-96 355.5 208 79.3
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 2.8e-96 355.5 208 75.5
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 3.6e-96 355.1 208 79.3
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 3.6e-96 355.1 208 76.4
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.7e-96 354.8 201 81.1
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 4.7e-96 354.8 209 77.0
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 6.1e-96 354.4 208 76.9
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 8.0e-96 354.0 208 77.4
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.0e-95 353.6 201 81.1
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.4e-95 353.2 201 81.1
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.8e-95 352.8 208 74.5
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.3e-95 352.4 208 79.3
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.0e-95 352.1 201 80.6
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 3.0e-95 352.1 208 78.8
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 4.0e-95 351.7 210 78.1
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.0e-95 351.7 208 77.9
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 6.8e-95 350.9 209 77.0
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 6.8e-95 350.9 208 76.0
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 8.9e-95 350.5 209 78.0
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.2e-94 350.1 198 79.8
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.5e-94 349.7 209 75.6
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.5e-94 349.7 206 76.7
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 2.6e-94 349.0 209 75.6
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 2.6e-94 349.0 208 77.9
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 4.4e-94 348.2 231 72.3
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 5.7e-94 347.8 206 76.7
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 5.7e-94 347.8 208 78.4
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 9.8e-94 347.1 206 76.7
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 9.8e-94 347.1 208 76.0
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 9.8e-94 347.1 206 76.7
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 2.2e-93 345.9 207 76.8
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 2.2e-93 345.9 209 76.1
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 2.8e-93 345.5 208 76.4
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 3.7e-93 345.1 206 76.2
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 3.7e-93 345.1 193 81.9
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 3.7e-93 345.1 209 74.6
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 4.9e-93 344.7 206 76.2
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 4.9e-93 344.7 208 77.9
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 6.3e-93 344.4 204 78.4
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 6.3e-93 344.4 206 76.2
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 8.3e-93 344.0 201 78.1
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 8.3e-93 344.0 208 77.9
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.8e-92 342.8 199 78.9
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 2.4e-92 342.4 204 77.9
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 3.2e-92 342.0 204 77.9
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 3.2e-92 342.0 206 76.2
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 3.2e-92 342.0 201 78.1
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 7.0e-92 340.9 204 77.5
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 9.2e-92 340.5 209 74.2
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 1.2e-91 340.1 208 75.0
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.5e-91 338.6 208 75.0
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 4.5e-91 338.2 206 75.2
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 5.9e-91 337.8 175 90.3
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 5.9e-91 337.8 202 78.2
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 7.8e-91 337.4 208 74.0
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 1.0e-90 337.0 209 75.6
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 2.3e-90 335.9 208 75.5
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 2.9e-90 335.5 202 77.7
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 6.6e-90 334.3 202 76.7
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 2.5e-89 332.4 217 73.3
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.3e-89 332.0 208 73.1
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 1.6e-88 329.7 209 72.7
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 3.6e-88 328.6 206 70.9
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 8.0e-88 327.4 228 66.2
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 1.4e-87 326.6 207 72.9
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 2.3e-87 325.9 207 72.9
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 4.0e-87 325.1 202 71.8
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 1.5e-86 323.2 248 65.3
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 1.7e-85 319.7 206 69.9
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 1.4e-84 316.6 210 67.6
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.9e-84 316.2 201 69.2
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.4e-84 315.8 210 68.1
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 1.6e-83 313.2 294 54.8
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 3.5e-83 312.0 209 69.4
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.0e-82 310.5 202 72.8
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 5.6e-81 304.7 166 81.9
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.1e-79 300.4 173 80.3
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 8.6e-66 254.2 424 38.0
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 4.3e-65 251.9 208 59.6
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 5.6e-65 251.5 145 78.6
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 2.8e-64 249.2 145 78.6
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 4.0e-63 245.4 178 65.2
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 8.9e-63 244.2 145 76.6
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 2.1e-56 223.0 113 88.5
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 2.7e-51 206.1 141 67.4
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 3.9e-50 202.2 189 51.9
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 7.6e-46 188.0 197 49.7
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 5.4e-44 181.8 125 69.6
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 1.2e-43 180.6 195 46.7
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.1e-41 174.1 138 65.2
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.3e-37 160.6 113 70.8
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 2.1e-35 153.3 88 73.9
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 7.9e-35 151.4 167 48.5
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.3e-32 144.1 95 70.5
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 8.2e-32 141.4 73 84.9
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 7.1e-28 128.3 79 75.9
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 3.1e-23 112.8 74 71.6
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 6.5e-21 105.1 64 75.0
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 7.2e-20 101.7 59 81.4
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 7.9e-19 98.2 63 73.0
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 9.7e-17 91.3 57 78.9
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 3.0e-10 69.7 59 66.1
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 3.3e-09 66.2 40 80.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 3.7e-08 62.8 35 74.3
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 3.7e-08 62.8 35 71.4
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 2.4e-07 60.1 43 67.4


User provided reference genes

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