Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 2.0e-158 562.4 287 100.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 2.2e-112 409.5 236 85.2
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.3e-91 340.5 237 74.3
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 2.3e-85 319.7 237 70.5
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 7.4e-84 314.7 233 70.4
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.2e-67 260.0 185 68.6
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.2e-67 260.0 178 66.9
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 4.8e-67 258.8 185 68.1
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.1e-66 257.7 229 58.1
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 3.1e-66 256.1 188 66.5
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.2e-65 254.2 184 67.4
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.5e-65 253.8 191 65.4
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.5e-65 253.8 184 66.8
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 2.0e-65 253.4 181 68.0
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 2.0e-65 253.4 175 66.9
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.0e-65 253.4 177 69.5
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 4.5e-65 252.3 181 66.3
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 4.5e-65 252.3 178 67.4
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 5.9e-65 251.9 235 57.9
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.0e-64 251.1 235 57.9
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 2.9e-64 249.6 228 59.2
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.8e-64 249.2 175 66.9
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 5.0e-64 248.8 248 55.2
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 6.5e-64 248.4 178 65.7
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 8.5e-64 248.1 175 68.6
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 8.5e-64 248.1 199 63.8
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.9e-63 246.9 194 61.9
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.5e-63 246.5 228 58.8
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.5e-63 246.5 233 54.1
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 2.5e-63 246.5 182 62.6
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 3.2e-63 246.1 190 64.2
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 5.5e-63 245.4 175 65.1
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 5.5e-63 245.4 175 65.1
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 5.5e-63 245.4 237 57.8
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 7.2e-63 245.0 194 60.8
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 7.2e-63 245.0 189 62.4
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.2e-62 244.2 174 65.5
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-62 244.2 187 61.5
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.2e-62 244.2 182 62.6
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.2e-62 244.2 224 57.1
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.1e-62 243.4 182 62.6
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 2.7e-62 243.0 185 63.2
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.7e-62 243.0 187 63.6
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.7e-62 243.0 176 64.8
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 3.6e-62 242.7 177 65.5
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 6.1e-62 241.9 179 64.8
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 7.9e-62 241.5 184 63.6
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 7.9e-62 241.5 192 60.4
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.0e-61 241.1 175 64.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.0e-61 241.1 175 64.0
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.0e-61 241.1 183 62.3
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.0e-61 241.1 181 64.6
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.4e-61 240.7 206 56.8
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.4e-61 240.7 184 64.7
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.8e-61 240.4 185 62.7
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.3e-61 240.0 195 60.0
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 3.0e-61 239.6 217 57.1
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 5.1e-61 238.8 189 61.4
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 5.1e-61 238.8 182 61.5
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 5.1e-61 238.8 182 61.5
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 5.1e-61 238.8 179 63.1
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.1e-60 237.7 181 64.6
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.1e-60 237.7 185 63.2
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.5e-60 237.3 181 63.0
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.0e-60 236.9 180 61.7
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.0e-60 236.9 179 62.6
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 4.3e-60 235.7 185 61.1
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 4.3e-60 235.7 185 61.1
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 4.3e-60 235.7 185 61.1
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 7.4e-60 235.0 234 52.6
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 7.4e-60 235.0 185 58.4
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 9.7e-60 234.6 179 62.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 9.7e-60 234.6 179 62.6
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.3e-59 234.2 237 57.4
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.7e-59 233.8 193 59.6
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 3.7e-59 232.6 207 56.0
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.8e-59 232.3 174 62.6
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 6.3e-59 231.9 178 62.4
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 6.3e-59 231.9 224 55.4
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.4e-58 230.7 189 60.3
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.4e-58 230.7 178 62.4
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.4e-58 230.7 231 51.5
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.4e-58 230.7 149 72.5
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.1e-58 229.6 186 61.3
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.1e-58 229.2 204 55.4
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.2e-57 227.6 180 61.7
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.5e-57 227.3 185 59.5
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.4e-57 226.1 186 58.1
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 4.5e-57 225.7 204 53.9
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 5.9e-57 225.3 183 58.5
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 5.9e-57 225.3 184 59.2
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.7e-56 223.8 182 61.5
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.7e-56 223.8 186 57.5
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 3.8e-56 222.6 182 57.7
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 3.8e-56 222.6 170 66.5
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 6.5e-56 221.9 163 66.3
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.5e-56 221.5 243 51.4
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.9e-55 220.3 182 61.0
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 3.2e-55 219.5 204 52.9
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 5.5e-55 218.8 210 52.9
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 5.5e-55 218.8 176 58.0
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.7e-54 216.5 150 68.7
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.6e-54 216.1 157 65.6
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.3e-53 213.4 178 58.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 6.7e-53 211.8 145 64.1
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.5e-52 210.7 148 66.9
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.6e-52 209.9 148 66.9
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.6e-52 209.9 158 64.6
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.4e-52 209.1 201 51.7
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.7e-52 208.8 166 61.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 7.4e-52 208.4 183 54.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 7.4e-52 208.4 210 52.4
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.7e-51 207.2 143 64.3
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.8e-51 206.5 141 69.5
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 3.7e-51 206.1 178 55.6
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 4.8e-51 205.7 140 65.0
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 6.3e-51 205.3 135 68.9
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.5e-49 200.7 122 79.5
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 2.0e-49 200.3 174 56.3
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.3e-48 197.6 191 55.0
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.3e-48 197.6 138 68.8
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.2e-48 196.8 180 56.1
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.8e-48 196.1 155 61.9
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.0e-48 195.7 182 53.3
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.7e-46 189.9 139 66.2
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.6e-46 189.5 140 64.3
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.8e-43 179.1 142 55.6
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 6.3e-43 178.7 141 56.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.8e-42 177.2 167 50.9
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.1e-42 176.4 165 52.7
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 7.0e-42 175.3 142 57.0
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.6e-41 174.1 139 53.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.8e-37 160.6 144 53.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.2e-36 157.9 183 44.8
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.0e-36 157.1 151 55.0
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.7e-35 154.1 190 45.8
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.1e-34 148.3 186 42.5
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 2.7e-33 146.7 139 52.5
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.2e-32 143.7 172 45.9
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 4.2e-31 139.4 144 53.5
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 3.6e-30 136.3 144 52.8
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.6e-28 130.2 109 59.6
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 4.5e-25 119.4 124 49.2
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.5e-23 114.4 149 47.0
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 6.8e-21 105.5 79 59.5
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 3.9e-16 89.7 173 30.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.9e-15 87.4 142 33.1
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 9.8e-12 75.1 131 31.3
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 7.0e-10 68.9 151 33.8
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 2.0e-09 67.4 83 47.0
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 3.5e-09 66.6 60 55.0
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.5e-09 66.6 152 27.6
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.0e-09 65.9 159 28.3
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.7e-08 64.3 120 31.7
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 3.3e-07 60.1 133 28.6
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.3e-07 59.7 75 41.3


User provided reference genes

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