Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 2.3e-215 751.9 364 100.0
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 8.2e-205 716.8 364 94.2
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 2.2e-197 692.2 361 91.7
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 3.4e-195 684.9 361 91.1
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.7e-178 629.4 362 84.0
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 2.2e-178 629.0 363 82.4
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.9e-177 625.9 362 83.4
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 4.2e-177 624.8 364 81.6
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 6.1e-176 620.9 363 82.4
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 6.1e-176 620.9 365 81.9
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 8.0e-176 620.5 362 82.6
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.0e-175 620.2 366 81.1
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.0e-175 620.2 362 81.2
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 3.0e-175 618.6 364 82.1
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 7.4e-174 614.0 363 82.1
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 7.4e-174 614.0 362 80.9
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.3e-173 613.2 361 82.0
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 2.8e-173 612.1 363 81.8
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 4.8e-173 611.3 367 79.6
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 8.2e-173 610.5 366 80.1
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.1e-172 610.1 360 80.8
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 1.4e-172 609.8 361 79.8
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.4e-172 609.0 361 80.1
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 5.3e-172 607.8 369 79.1
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 1.6e-171 606.3 361 80.3
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 5.9e-171 604.4 363 81.0
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 5.9e-171 604.4 361 79.8
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.9e-171 604.4 361 79.8
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 7.7e-171 604.0 361 79.8
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.0e-170 603.6 361 79.8
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.3e-170 603.2 367 79.3
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.7e-170 602.8 361 79.2
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 2.2e-170 602.4 364 78.8
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.9e-170 602.1 361 79.5
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.9e-170 602.1 362 78.5
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 3.8e-170 601.7 361 79.5
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 3.8e-170 601.7 361 79.5
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 5.0e-170 601.3 357 80.1
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 5.0e-170 601.3 360 78.9
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 8.5e-170 600.5 365 77.8
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 8.5e-170 600.5 367 78.7
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.5e-169 599.7 360 79.4
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 3.2e-169 598.6 361 78.9
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 4.2e-169 598.2 359 79.9
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 5.5e-169 597.8 360 77.2
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 9.4e-169 597.0 365 78.1
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 1.6e-168 596.3 359 78.8
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 2.1e-168 595.9 359 79.1
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 2.1e-168 595.9 360 78.6
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.7e-168 595.5 390 74.4
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 3.6e-168 595.1 359 79.9
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 6.1e-168 594.3 360 78.3
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.4e-167 593.2 357 79.0
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 1.8e-167 592.8 361 78.9
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.8e-167 592.8 368 78.5
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.8e-167 592.8 359 79.4
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 5.2e-167 591.3 360 78.1
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 6.7e-167 590.9 358 78.8
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 6.7e-167 590.9 359 79.4
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 8.8e-167 590.5 359 78.8
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.2e-166 590.1 359 79.7
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.5e-166 589.7 360 77.5
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.5e-166 589.7 359 78.8
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.5e-166 589.7 359 78.8
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.6e-166 589.0 390 73.3
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 4.4e-166 588.2 358 78.5
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.7e-166 587.8 365 76.4
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 5.7e-166 587.8 359 77.4
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.5e-166 587.4 365 76.2
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.5e-166 587.4 365 76.2
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.3e-165 586.6 361 75.9
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 2.8e-165 585.5 359 77.7
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.8e-165 585.5 356 77.8
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 3.7e-165 585.1 358 79.1
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 4.8e-165 584.7 360 76.9
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 4.8e-165 584.7 360 77.5
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 1.4e-164 583.2 360 76.7
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.4e-164 583.2 358 76.8
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 3.1e-164 582.0 359 77.7
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 5.3e-164 581.3 360 76.1
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 9.1e-164 580.5 356 78.1
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 1.2e-163 580.1 359 77.7
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 4.5e-163 578.2 360 75.8
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 2.9e-162 575.5 358 76.8
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 2.5e-161 572.4 359 75.5
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.2e-161 570.9 359 75.8
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.6e-160 569.7 367 74.1
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.6e-160 569.7 359 76.3
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 6.1e-160 567.8 363 74.4
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 8.0e-160 567.4 453 63.8
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 8.0e-160 567.4 368 73.1
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.0e-159 567.0 416 69.5
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 1.4e-159 566.6 366 73.5
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 5.7e-158 561.2 365 73.2
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 4.8e-157 558.1 439 65.6
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 9.1e-156 553.9 361 74.8
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.9e-154 548.9 326 79.8
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.5e-153 546.6 362 71.0
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.0e-151 540.4 374 68.7
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 2.3e-151 539.3 453 58.9
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 5.2e-151 538.1 353 73.4
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.8e-151 537.7 357 70.6
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.6e-147 526.6 358 69.6
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.6e-147 526.6 355 69.0
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 5.9e-147 524.6 362 69.1
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 2.3e-146 522.7 344 76.7
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 8.6e-146 520.8 360 68.3
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 4.3e-145 518.5 387 69.3
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 2.1e-144 516.2 360 66.9
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 4.0e-143 511.9 357 66.9
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 5.4e-140 501.5 274 86.5
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 5.4e-140 501.5 362 64.6
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 4.3e-137 491.9 359 62.4
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 2.1e-136 489.6 356 64.0
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.8e-136 489.2 520 51.0
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 3.6e-128 462.2 255 85.1
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 9.9e-126 454.1 270 80.0
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 6.2e-120 434.9 385 55.8
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.8e-119 433.3 276 75.7
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 6.0e-107 391.7 348 56.0
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.4e-103 380.6 348 54.6
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.8e-103 380.2 380 50.3
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.2e-99 367.5 303 59.1
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 3.2e-84 316.2 226 67.3
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.3e-82 310.8 200 73.5
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 8.7e-82 308.1 271 59.4
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 3.4e-78 296.2 179 77.1
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 9.4e-76 288.1 180 77.8
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 4.6e-75 285.8 164 82.3
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 5.1e-74 282.3 162 82.1
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.4e-71 273.5 353 46.2
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.6e-67 260.8 183 67.2
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.7e-61 240.7 175 64.6
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 9.1e-55 218.4 118 87.3
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 5.0e-45 186.0 106 80.2
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.5e-44 184.5 170 57.1
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.2e-35 154.8 107 72.0
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 6.1e-35 152.5 89 82.0
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.6e-27 126.7 178 42.7
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 8.9e-26 122.1 88 63.6
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 8.6e-21 105.5 57 87.7
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.8e-18 97.8 55 78.2
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.0e-18 96.7 232 29.3
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 6.8e-18 95.9 62 69.4
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.2e-17 95.1 77 59.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.8e-17 92.0 83 57.8
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 2.7e-14 84.0 48 81.2
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 5.1e-13 79.7 47 74.5
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 2.0e-09 67.8 74 45.9
Manes.13G024000 Manihot esculenta HOM05D000018 ORTHO05D000453 7.6e-09 65.9 292 22.9
QL11p040202 Quercus lobata HOM05D000018 ORTHO05D001172 4.1e-07 60.1 352 22.2
QL11p038890 Quercus lobata HOM05D000018 ORTHO05D001172 5.4e-07 59.7 352 21.6
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 4.6e-06 56.6 32 78.1
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 7.8e-06 55.8 43 55.8


User provided reference genes

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