Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 0.0e+00 1473.8 734 100.0
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 0.0e+00 1283.1 734 86.6
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 0.0e+00 1239.9 728 84.8
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 0.0e+00 1107.8 649 84.9
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.9e-286 988.4 749 66.4
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 3.7e-281 971.5 749 64.5
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 2.7e-279 965.3 743 65.3
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.0e-275 953.4 742 65.1
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 1.8e-275 952.6 748 64.8
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 1.8e-275 952.6 752 64.0
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.2e-274 949.9 752 63.4
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 1.5e-274 949.5 740 64.5
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.3e-273 946.4 748 64.3
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 1.7e-273 946.0 743 65.4
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 1.3e-270 936.4 747 63.2
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 2.3e-270 935.6 740 63.8
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 4.2e-269 931.4 746 63.1
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 3.6e-268 928.3 752 62.9
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 3.6e-268 928.3 748 63.8
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 4.7e-268 927.9 752 62.8
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 8.0e-268 927.2 746 63.0
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 3.9e-262 908.3 743 63.1
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 6.6e-262 907.5 746 61.9
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 1.5e-261 906.4 752 62.4
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 2.5e-261 905.6 747 62.8
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 7.3e-261 904.0 751 61.9
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 8.0e-260 900.6 753 62.0
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.3e-259 899.0 746 62.3
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 4.0e-259 898.3 750 60.9
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 5.2e-259 897.9 763 60.8
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 6.4e-257 891.0 747 60.9
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 1.1e-256 890.2 749 61.4
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 3.2e-256 888.6 747 61.0
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 1.2e-255 886.7 739 61.3
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 2.7e-255 885.6 779 59.7
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 3.0e-254 882.1 747 60.9
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 5.6e-253 877.9 744 60.8
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 1.2e-252 876.7 737 60.7
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 1.6e-252 876.3 737 60.5
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.1e-252 875.9 775 59.2
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 8.0e-252 874.0 736 60.7
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.8e-251 872.8 777 59.3
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 2.3e-251 872.5 667 65.8
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 4.0e-251 871.7 745 61.3
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 6.8e-251 870.9 739 60.5
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.8e-251 870.9 778 59.1
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 3.4e-250 868.6 745 61.2
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 5.8e-250 867.8 739 60.5
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 5.8e-250 867.8 741 60.2
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 7.5e-250 867.5 747 59.0
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 9.8e-250 867.1 675 65.3
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.4e-248 863.2 754 60.3
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.4e-248 863.2 738 60.6
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.9e-248 862.8 745 59.6
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 2.4e-248 862.4 746 59.2
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 4.1e-248 861.7 738 60.2
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 4.1e-248 861.7 729 61.0
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 9.2e-248 860.5 743 59.5
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 3.5e-247 858.6 742 60.0
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 3.5e-247 858.6 747 59.0
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 1.3e-246 856.7 743 59.8
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 3.0e-246 855.5 747 59.3
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 6.6e-246 854.4 772 59.1
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 1.5e-245 853.2 758 59.0
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 2.5e-245 852.4 740 59.9
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 4.3e-245 851.7 759 58.2
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 7.3e-245 850.9 672 64.3
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 7.3e-245 850.9 754 59.0
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 9.5e-245 850.5 740 60.0
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.4e-243 846.7 610 70.3
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 1.8e-243 846.3 753 58.7
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 4.0e-243 845.1 773 57.4
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 7.6e-242 840.9 747 58.6
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 7.6e-242 840.9 747 58.6
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 7.6e-242 840.9 802 56.1
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 9.9e-242 840.5 833 54.7
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 6.4e-241 837.8 745 58.7
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 7.8e-239 830.9 665 63.9
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 2.3e-238 829.3 748 58.2
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 9.6e-237 823.9 769 56.7
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 1.1e-235 820.5 675 61.9
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 6.8e-235 817.8 737 58.3
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 2.6e-234 815.8 750 57.5
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 4.9e-233 811.6 760 56.8
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 5.6e-229 798.1 817 53.6
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.3e-225 786.9 767 55.3
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 4.9e-225 785.0 742 55.3
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 6.4e-225 784.6 696 58.6
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 3.9e-222 775.4 733 55.8
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 1.5e-221 773.5 757 55.2
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 3.3e-221 772.3 675 58.8
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.1e-219 767.3 672 59.7
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 4.9e-217 758.4 666 59.2
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 7.1e-216 754.6 755 53.4
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 1.2e-215 753.8 768 53.4
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 1.5e-210 736.9 743 53.2
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 1.4e-208 730.3 571 67.3
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.6e-204 716.8 743 52.4
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 1.1e-203 714.1 824 48.8
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.7e-201 706.8 750 52.3
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 6.7e-198 694.9 746 51.9
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 1.7e-193 680.2 744 50.3
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 1.4e-190 670.6 622 57.2
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 8.2e-180 634.8 628 53.8
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.4e-179 634.0 754 47.5
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 4.5e-178 629.0 926 42.3
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.0e-170 603.6 742 47.2
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 2.5e-168 596.7 785 45.1
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 7.5e-165 585.1 585 51.6
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 1.7e-164 583.9 630 50.8
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 8.5e-161 571.6 557 54.0
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 2.5e-160 570.1 597 51.1
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 1.3e-153 547.7 614 49.7
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 7.5e-149 531.9 527 53.3
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 5.4e-147 525.8 556 51.8
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.3e-145 521.2 655 47.2
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.4e-126 458.0 402 57.0
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 5.4e-107 392.9 399 52.6
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 9.6e-88 328.9 365 51.8
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 8.4e-84 315.8 544 37.7
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 9.0e-78 295.8 691 31.7
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 9.0e-78 295.8 618 33.5
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 7.0e-62 243.0 374 39.3
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.0e-53 214.9 236 46.6
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.0e-53 214.9 236 46.6
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 7.2e-51 206.5 188 62.2
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.4e-46 191.4 594 28.5
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 5.0e-44 183.7 183 50.3
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.6e-42 177.6 147 61.9
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 2.7e-37 161.4 171 50.9
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 5.0e-36 157.1 102 75.5
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 1.4e-33 149.1 77 90.9
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 1.2e-32 146.0 77 88.3
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 2.2e-31 141.7 77 84.4
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 1.0e-20 106.3 56 89.3
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 4.3e-19 100.9 175 41.1
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 3.1e-17 94.7 62 67.7
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 2.9e-15 88.2 212 34.4
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 3.2e-14 84.7 102 41.2
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 2.3e-12 78.6 50 68.0
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 3.0e-12 78.2 88 50.0
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 4.7e-10 70.9 79 46.8
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.0e-08 65.5 56 57.1


User provided reference genes

Program Settings