Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 8.8e-222 773.5 436 100.0
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.1e-128 464.2 443 65.9
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.2e-125 454.1 407 67.8
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 1.3e-124 450.7 442 65.4
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 6.5e-124 448.4 442 65.2
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 1.6e-58 231.1 468 42.3
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 7.6e-56 222.2 433 42.5
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 6.4e-55 219.2 486 37.7
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 3.2e-54 216.9 434 43.3
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.6e-53 214.5 437 41.6
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 4.6e-53 213.0 487 37.4
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 6.0e-53 212.6 527 37.8
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 2.3e-52 210.7 476 41.0
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 9.6e-51 205.3 437 39.6
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 1.6e-50 204.5 492 38.6
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 1.6e-50 204.5 474 37.8
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 2.8e-50 203.8 487 39.0
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 5.2e-49 199.5 401 40.6
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 1.7e-47 194.5 456 40.1
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 8.4e-47 192.2 432 38.9
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 1.9e-46 191.0 480 36.7
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 4.2e-46 189.9 473 37.6
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 4.6e-45 186.4 476 39.1
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 1.0e-44 185.3 601 32.3
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 1.7e-44 184.5 450 36.9
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 1.7e-44 184.5 428 37.9
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 1.7e-44 184.5 522 35.4
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 3.9e-44 183.3 429 36.6
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 5.1e-44 183.0 536 35.6
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 5.1e-44 183.0 587 32.9
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 5.1e-44 183.0 427 37.9
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 1.1e-43 181.8 480 34.6
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 1.5e-43 181.4 350 43.4
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 1.9e-43 181.0 422 38.6
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 2.5e-43 180.6 447 36.7
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 3.3e-43 180.3 513 33.9
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 4.3e-43 179.9 464 36.0
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 2.1e-42 177.6 458 38.0
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.1e-41 175.3 450 35.1
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 3.1e-41 173.7 424 36.3
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 4.0e-41 173.3 429 38.0
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 4.0e-41 173.3 476 37.2
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 4.0e-41 173.3 431 37.1
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 4.0e-41 173.3 443 36.8
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 1.2e-40 171.8 426 37.6
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 2.0e-40 171.0 508 33.3
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 2.6e-40 170.6 439 36.2
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 3.4e-40 170.2 453 36.9
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 5.8e-40 169.5 568 32.9
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 5.8e-40 169.5 444 37.2
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 7.6e-40 169.1 167 57.5
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 9.9e-40 168.7 187 51.9
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 9.9e-40 168.7 485 34.2
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 1.7e-39 167.9 426 37.8
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 2.2e-39 167.5 428 37.9
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 6.4e-39 166.0 446 34.8
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 8.4e-39 165.6 441 35.6
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 2.4e-38 164.1 425 37.4
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 3.2e-38 163.7 432 34.0
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 4.2e-38 163.3 497 35.6
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 9.3e-38 162.2 501 35.3
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 1.0e-36 158.7 434 31.8
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 1.3e-36 158.3 457 31.5
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.7e-36 157.9 453 33.8
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 3.0e-36 157.1 424 32.8
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 3.9e-36 156.8 426 37.1
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 6.6e-36 156.0 491 33.0
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 5.6e-35 152.9 434 35.5
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 2.1e-34 151.0 433 33.0
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 2.8e-34 150.6 452 34.7
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 8.1e-34 149.1 87 78.2
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 2.4e-33 147.5 456 32.5
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 3.1e-33 147.1 410 36.6
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 3.1e-33 147.1 465 33.1
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 4.0e-33 146.7 370 34.1
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 5.3e-33 146.4 429 36.8
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 1.2e-32 145.2 155 54.8
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 3.4e-32 143.7 405 34.6
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 4.5e-32 143.3 446 33.4
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 7.6e-32 142.5 423 33.3
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 4.9e-31 139.8 430 34.4
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 6.4e-31 139.4 361 34.3
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 6.4e-31 139.4 418 33.3
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 3.2e-30 137.1 460 31.3
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 4.2e-30 136.7 94 71.3
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 4.2e-30 136.7 429 32.4
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 5.5e-30 136.3 433 33.0
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 9.3e-30 135.6 471 32.9
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 1.6e-29 134.8 431 31.6
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 2.7e-29 134.0 452 35.2
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 2.7e-29 134.0 453 32.5
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.6e-29 133.3 138 55.1
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.6e-29 133.3 138 55.1
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 1.0e-28 132.1 96 67.7
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 1.0e-28 132.1 96 67.7
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 1.0e-28 132.1 96 67.7
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.0e-28 132.1 531 29.9
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 5.1e-28 129.8 403 30.5
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 8.7e-28 129.0 439 33.0
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.5e-27 128.3 407 32.7
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 5.6e-27 126.3 410 31.5
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 2.8e-26 124.0 430 34.2
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 2.8e-26 124.0 430 34.2
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 2.8e-26 124.0 430 34.2
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 2.8e-26 124.0 460 30.9
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 2.8e-26 124.0 326 35.6
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 3.7e-26 123.6 431 33.9
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 3.7e-26 123.6 433 34.4
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 1.8e-25 121.3 93 65.6
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 9.0e-25 119.0 228 37.7
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 1.2e-24 118.6 359 32.0
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 2.0e-24 117.9 378 36.5
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 2.0e-24 117.9 87 65.5
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 5.8e-24 116.3 93 59.1
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 8.4e-23 112.5 93 66.7
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 8.4e-23 112.5 358 31.6
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-22 111.7 72 70.8
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 2.1e-21 107.8 93 62.4
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.1e-19 102.1 62 77.4
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 7.4e-19 99.4 297 34.0
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 4.8e-18 96.7 222 36.9
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 1.1e-14 85.5 397 30.2
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 1.2e-13 82.0 429 29.4
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 8.7e-12 75.9 95 52.6
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 6.3e-10 69.7 63 61.9
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 6.3e-10 69.7 52 63.5
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.1e-09 68.9 384 27.6
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.4e-09 68.6 463 26.1
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.5e-08 65.1 394 28.9
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 2.0e-08 64.7 288 28.8
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 4.5e-08 63.5 34 85.3
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 4.5e-08 63.5 34 85.3
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 1.0e-07 62.4 138 41.3
DCAR_001127 Daucus carota HOM05D000703 ORTHO05D006717 2.9e-07 60.8 122 36.9


User provided reference genes

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