Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 2411.3 1284 100.0
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 2171.7 1287 90.1
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 2134.8 1284 88.9
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 2066.6 1287 86.5
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 2024.2 1288 84.8
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1624.4 1289 67.2
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1617.4 1330 65.9
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1614.7 1285 68.3
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1614.4 1322 65.8
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1605.1 1227 68.7
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1586.6 1357 65.6
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1583.2 1313 65.5
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1581.2 1288 66.3
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1580.5 1282 66.3
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1579.7 1235 67.8
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1576.6 1288 65.4
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1573.9 1296 66.2
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1572.8 1180 69.7
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1570.1 1287 65.5
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1568.1 1226 68.0
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1567.7 1195 69.2
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1557.0 1285 65.5
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1550.4 1285 64.1
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1545.4 1285 65.4
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1523.8 1349 63.2
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1523.5 1317 63.6
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1523.1 1318 64.2
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1521.5 1233 66.4
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1521.1 1195 67.6
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1520.8 1286 64.3
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1520.0 1285 65.1
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1516.5 1204 67.1
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1513.8 1287 64.6
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1513.4 1227 66.0
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1512.7 1303 63.0
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1512.7 1354 62.4
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1511.5 1254 65.2
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1507.7 1290 64.0
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1506.5 1310 63.1
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1494.9 1209 66.4
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1494.2 1357 61.6
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1491.9 1245 64.8
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1488.8 1284 64.6
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1486.9 1293 62.7
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1486.1 1294 63.0
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1484.2 1193 66.0
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1479.5 1252 63.6
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1471.4 1258 63.2
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1465.7 1236 63.7
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1464.1 1289 62.3
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1462.6 1295 60.6
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1461.4 1260 63.2
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1459.5 1246 63.6
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1443.3 1301 62.1
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1439.5 1245 63.2
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1433.3 1288 61.6
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1430.2 1271 60.7
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1427.2 1275 62.5
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1426.8 1263 61.8
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1423.7 1251 62.4
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1417.1 1313 60.5
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1409.0 1282 60.1
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1404.4 1317 59.9
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1403.3 1283 59.8
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1399.8 1281 59.6
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1398.6 1301 60.0
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1398.3 1313 58.4
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1397.1 1292 60.1
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1392.9 1297 59.6
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1389.0 1297 59.4
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1387.1 1285 59.8
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1383.6 1323 58.7
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1382.5 1219 63.0
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1374.0 1253 59.8
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1369.8 1253 59.8
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1367.8 1178 61.9
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1350.5 1319 57.6
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1349.7 1363 56.4
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1345.1 1191 61.0
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1340.9 1313 57.0
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1331.2 1306 57.2
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1327.8 1317 56.5
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1317.8 1321 56.4
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1317.0 1193 60.4
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1317.0 1193 60.4
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1310.0 1246 57.7
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1305.8 1212 59.0
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1302.3 1313 56.4
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1298.5 1197 59.2
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1285.8 1312 54.8
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1278.1 1263 57.0
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1258.4 1079 62.7
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1243.8 1271 55.5
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1235.3 1176 58.2
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1210.7 1257 54.3
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1204.5 1246 54.2
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1197.6 1228 55.8
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1164.1 1246 54.0
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1152.1 1265 51.5
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1146.7 1251 53.2
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1135.2 1119 58.4
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1128.2 949 64.7
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1116.3 1269 50.7
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1097.8 1339 48.5
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 2.7e-303 1045.8 1261 49.4
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.6e-295 1020.0 753 70.7
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 8.2e-292 1007.7 1235 47.4
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 3.9e-286 988.8 1224 47.5
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.2e-258 897.5 703 68.4
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 1.0e-249 867.8 1299 43.6
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 1.8e-222 777.3 1118 44.6
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 1.9e-184 651.0 539 67.7
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 5.0e-172 609.8 429 71.3
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 2.5e-163 580.9 817 47.4
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.0e-153 548.9 671 51.4
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 4.4e-152 543.5 454 63.9
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 4.1e-150 537.0 1232 34.4
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 7.0e-150 536.2 1233 33.1
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 3.5e-149 533.9 1265 32.5
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 4.2e-147 526.9 1297 33.6
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.7e-146 524.2 541 55.1
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.5e-136 491.9 611 47.0
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.6e-130 471.9 1279 30.9
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 5.2e-129 466.8 1141 31.8
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 8.6e-108 396.4 1047 32.1
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.1e-98 365.2 1040 30.6
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.5e-96 359.0 1223 27.3
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 2.2e-79 302.0 247 63.6
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 6.0e-77 293.9 331 50.8
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 6.0e-69 267.3 590 35.8
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.0e-68 266.5 589 35.3
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 9.1e-41 173.7 1220 23.1
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.4e-40 171.8 216 47.7
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 2.1e-37 162.5 1241 23.4
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.5e-30 139.0 348 30.7
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.3e-28 132.5 129 53.5
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 4.0e-28 131.7 98 67.3
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.8e-25 122.9 142 51.4
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.1e-21 109.4 130 46.9
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 3.0e-20 105.5 132 41.7
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 3.1e-17 95.5 111 51.4
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 5.4e-17 94.7 187 35.3
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 2.3e-15 89.4 61 72.1
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 6.5e-15 87.8 57 73.7
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 8.6e-15 87.4 190 33.7
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 1.5e-14 86.7 82 56.1
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.8e-12 79.7 71 56.3
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.8e-12 79.7 59 67.8
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.8e-12 79.7 59 67.8
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 3.0e-12 79.0 74 50.0
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 3.0e-12 79.0 73 52.1
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.8e-09 69.7 84 39.3
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 1.7e-07 63.2 51 60.8
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 2.9e-07 62.4 86 45.3
Glyma.07G215100 Glycine max HOM05D005611 ORTHO05D006852 2.9e-07 62.4 70 51.4
Cfa025397 Carpinus fangiana HOM05D004672 ORTHO05D126383 3.3e-06 58.9 428 25.0


User provided reference genes

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