Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 3.3e-116 421.8 222 100.0
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.7e-86 322.4 248 73.8
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 8.8e-85 317.4 248 71.0
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 7.7e-81 304.3 248 67.7
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 3.8e-80 302.0 248 68.1
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 2.0e-68 263.1 250 62.0
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 2.0e-68 263.1 250 62.4
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 9.8e-68 260.8 249 60.2
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.3e-67 260.4 250 61.6
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 1.7e-67 260.0 247 59.9
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 3.7e-67 258.8 251 61.8
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 6.3e-67 258.1 249 60.2
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 6.3e-67 258.1 240 62.1
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 1.4e-66 256.9 250 59.2
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 2.4e-66 256.1 249 61.0
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 3.1e-66 255.8 247 58.7
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 4.1e-66 255.4 243 59.7
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 7.0e-66 254.6 248 58.1
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 7.0e-66 254.6 249 59.0
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 2.0e-65 253.1 236 61.0
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 4.5e-65 251.9 246 56.9
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 5.9e-65 251.5 250 57.6
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 5.9e-65 251.5 249 58.6
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.0e-64 250.8 249 58.6
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.3e-64 250.4 250 58.0
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.2e-64 249.6 248 59.3
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.2e-64 249.6 249 58.6
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 5.0e-64 248.4 252 56.3
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 1.1e-63 247.3 246 56.5
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 1.1e-63 247.3 249 58.6
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.1e-63 247.3 249 57.8
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 5.5e-63 245.0 242 57.4
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 5.5e-63 245.0 246 57.3
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 9.5e-63 244.2 247 57.5
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.2e-62 243.8 247 57.5
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.2e-62 243.8 247 57.5
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 1.6e-62 243.4 248 57.7
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.7e-62 242.7 250 56.8
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 3.6e-62 242.3 279 54.1
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 4.7e-62 241.9 226 59.7
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 4.7e-62 241.9 255 57.6
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 6.1e-62 241.5 245 56.7
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 6.1e-62 241.5 206 65.5
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 1.0e-61 240.7 245 59.2
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 1.4e-61 240.4 249 59.0
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.4e-61 240.4 248 58.5
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 1.8e-61 240.0 245 55.5
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 5.2e-61 238.4 248 57.3
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.2e-61 238.4 250 55.6
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 6.8e-61 238.0 241 56.4
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.2e-60 237.3 247 56.7
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.0e-60 236.5 250 55.6
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.6e-60 236.1 244 55.3
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 9.8e-60 234.2 247 53.8
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 9.8e-60 234.2 240 55.8
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 1.7e-59 233.4 241 55.6
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.2e-59 233.0 213 60.6
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 3.7e-59 232.3 241 55.2
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 4.9e-59 231.9 224 58.0
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.9e-59 231.9 241 55.2
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 6.3e-59 231.5 273 53.1
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 6.3e-59 231.5 241 56.0
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 6.3e-59 231.5 192 65.6
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.8e-58 229.9 241 54.8
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.4e-58 229.6 238 55.0
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 3.1e-58 229.2 224 58.9
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 2.7e-57 226.1 240 53.8
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 2.7e-57 226.1 249 55.0
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 3.5e-57 225.7 249 55.0
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.7e-56 223.4 237 52.7
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.3e-56 223.0 243 52.3
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 3.8e-56 222.2 240 54.6
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 3.8e-56 222.2 246 50.0
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 5.0e-56 221.9 246 50.0
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 8.6e-56 221.1 251 53.0
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 8.6e-56 221.1 257 51.8
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 1.1e-55 220.7 228 55.3
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.9e-55 219.9 251 53.0
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 4.3e-55 218.8 245 54.3
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 5.6e-55 218.4 238 55.0
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 5.6e-55 218.4 276 48.2
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 7.3e-55 218.0 242 54.5
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 9.5e-55 217.6 246 54.5
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 4.7e-54 215.3 239 51.5
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 4.7e-54 215.3 245 53.1
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 1.4e-53 213.8 223 56.1
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 5.2e-53 211.8 247 53.4
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 6.8e-53 211.5 249 51.4
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 6.8e-53 211.5 245 51.4
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 6.8e-53 211.5 209 55.5
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 1.5e-52 210.3 255 51.8
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.5e-52 210.3 238 53.4
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 1.5e-52 210.3 238 53.4
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 1.5e-52 210.3 249 52.6
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.5e-52 210.3 216 56.0
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 2.6e-52 209.5 245 51.8
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 2.6e-52 209.5 245 51.8
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 7.5e-52 208.0 206 57.3
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 7.5e-52 208.0 206 57.3
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 9.8e-52 207.6 250 52.0
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 9.8e-52 207.6 246 51.6
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.3e-51 207.2 206 57.3
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.3e-51 207.2 206 57.3
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 1.7e-51 206.8 206 57.3
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.7e-51 206.8 206 57.3
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 2.2e-51 206.5 250 51.6
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 2.2e-51 206.5 249 51.8
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 2.9e-51 206.1 206 56.8
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 2.9e-51 206.1 206 56.8
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 3.7e-51 205.7 249 51.0
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 6.4e-51 204.9 220 53.6
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 1.4e-50 203.8 206 54.4
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.4e-50 203.8 208 56.2
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 2.4e-50 203.0 249 49.8
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 4.1e-50 202.2 249 51.4
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 5.4e-50 201.8 250 50.4
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 7.0e-50 201.4 245 49.4
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 7.0e-50 201.4 254 48.8
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.6e-49 200.3 235 48.9
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 2.7e-49 199.5 205 55.6
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 4.6e-49 198.7 226 49.6
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 4.6e-49 198.7 254 49.2
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 4.6e-49 198.7 238 50.0
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 5.9e-49 198.4 185 59.5
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 7.8e-49 198.0 249 47.4
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.7e-48 196.8 246 48.0
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.7e-48 196.8 246 49.2
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 2.3e-48 196.4 206 53.4
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 3.0e-48 196.1 240 46.7
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 6.6e-48 194.9 238 49.2
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.1e-47 194.1 244 46.7
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.1e-47 194.1 226 47.8
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 1.1e-47 194.1 233 50.6
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.9e-47 193.4 225 53.3
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.9e-47 193.4 249 47.0
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 9.5e-47 191.0 356 38.5
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 3.6e-46 189.1 192 55.2
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.0e-45 185.7 294 40.1
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 2.9e-43 179.5 325 39.7
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 9.2e-42 174.5 215 48.8
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 2.5e-39 166.4 199 47.7
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 6.2e-38 161.8 191 50.8
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 1.1e-37 161.0 208 49.5
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.5e-36 157.1 201 50.2
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 4.4e-36 155.6 140 62.1
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 6.0e-33 145.2 239 39.7
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 3.9e-32 142.5 172 49.4
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 2.5e-31 139.8 158 53.2
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 4.3e-31 139.0 135 56.3
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 8.9e-29 131.3 188 43.1
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 3.4e-28 129.4 188 39.9
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 5.8e-28 128.6 188 39.9
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 2.9e-27 126.3 190 40.0
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.4e-26 124.0 143 51.7
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 1.9e-26 123.6 141 49.6
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.9e-26 123.6 189 39.7
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.2e-22 110.9 87 66.7
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.4e-21 107.5 99 57.6
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 3.1e-21 106.3 183 34.4
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 5.8e-20 102.1 61 82.0
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 7.6e-20 101.7 192 32.3
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.9e-19 99.0 65 73.8
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 4.2e-18 95.9 156 37.2
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 4.2e-18 95.9 80 65.0
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.3e-16 90.9 199 35.7
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 8.7e-16 88.2 183 32.2
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 1.9e-15 87.0 101 52.5
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.9e-15 87.0 70 62.9
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.6e-15 85.5 70 60.0
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.3e-14 84.3 74 58.1
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.6e-14 84.0 70 60.0
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.8e-14 83.2 87 55.2
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 1.1e-13 81.3 202 31.2
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 6.9e-13 78.6 64 62.5
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 4.9e-11 72.4 221 26.7


User provided reference genes

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