Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 3.0e-179 631.7 319 100.0
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.7e-153 545.0 327 87.2
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 9.2e-152 540.4 329 86.3
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.6e-151 539.7 329 86.3
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 7.6e-114 414.5 321 67.0
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 9.3e-112 407.5 329 64.1
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 2.1e-111 406.4 324 65.4
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 4.6e-111 405.2 325 67.4
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 7.9e-111 404.4 308 67.9
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 3.9e-110 402.1 325 68.3
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 5.1e-110 401.7 329 64.7
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 3.3e-109 399.1 325 67.4
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 9.6e-109 397.5 325 64.9
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.6e-108 395.6 324 63.0
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.1e-107 394.0 311 65.6
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 4.0e-107 392.1 324 63.6
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.3e-107 391.7 318 67.0
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.0e-106 389.8 310 64.5
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.3e-105 387.1 325 60.3
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 4.9e-105 385.2 291 69.1
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 3.2e-104 382.5 323 63.2
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.1e-104 381.3 318 64.8
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.2e-103 380.6 325 61.5
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.5e-103 379.0 318 64.5
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 4.6e-103 378.6 318 64.5
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.1e-102 375.2 319 64.3
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 6.7e-102 374.8 290 65.5
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.7e-102 374.4 319 63.9
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.1e-101 374.0 310 64.5
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.9e-101 373.2 324 59.3
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 4.3e-101 372.1 327 60.2
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.6e-101 371.7 298 66.4
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.6e-100 370.2 322 62.1
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.1e-99 367.5 324 58.3
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 9.0e-99 364.4 324 58.0
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.5e-98 363.6 311 64.0
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.6e-98 362.8 307 62.2
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.6e-98 362.8 301 60.8
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.6e-98 362.8 326 58.3
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.4e-98 362.5 301 60.1
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 5.8e-98 361.7 303 62.7
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 5.8e-98 361.7 256 69.9
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 7.6e-98 361.3 323 59.1
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.6e-98 361.3 309 62.8
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 7.6e-98 361.3 317 60.6
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.0e-97 360.9 324 57.1
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.9e-97 359.4 311 63.3
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 3.8e-97 359.0 288 64.9
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 4.9e-97 358.6 305 59.0
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 4.9e-97 358.6 301 63.8
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 4.9e-97 358.6 299 63.9
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 6.5e-97 358.2 328 59.8
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 6.5e-97 358.2 298 65.1
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 8.4e-97 357.8 309 58.9
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 1.9e-96 356.7 307 58.6
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.9e-96 356.7 288 64.6
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 4.2e-96 355.5 322 57.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 4.2e-96 355.5 249 69.9
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 7.1e-96 354.8 324 56.5
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 7.1e-96 354.8 324 56.5
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.1e-95 353.2 323 58.8
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.7e-95 352.8 330 56.4
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 3.5e-95 352.4 324 56.8
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.6e-95 352.1 320 59.4
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.6e-95 352.1 304 61.8
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 4.6e-95 352.1 287 64.5
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 6.0e-95 351.7 303 61.1
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 6.0e-95 351.7 313 60.4
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 7.9e-95 351.3 306 61.4
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.0e-94 350.9 325 59.1
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.8e-94 350.1 328 56.1
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 2.3e-94 349.7 324 56.5
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 2.3e-94 349.7 309 57.6
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 5.1e-94 348.6 322 56.8
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 6.7e-94 348.2 309 57.6
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.9e-93 346.7 330 56.1
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.9e-93 346.7 307 56.4
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.9e-93 346.7 323 56.7
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.9e-93 346.7 303 61.7
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 7.4e-93 344.7 328 57.6
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.3e-92 344.0 324 59.3
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 2.8e-92 342.8 324 56.8
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-91 340.5 288 64.9
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-91 340.5 288 64.9
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 3.1e-91 339.3 322 54.7
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.1e-91 339.0 318 56.9
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.2e-90 337.4 301 55.8
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.3e-89 334.0 320 56.2
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.7e-89 333.6 306 57.2
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 3.8e-89 332.4 296 59.8
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.4e-89 331.3 306 57.5
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 8.4e-89 331.3 320 55.3
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.9e-88 330.1 274 63.1
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 4.2e-88 328.9 319 54.9
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 4.2e-88 328.9 296 58.4
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 9.3e-88 327.8 322 55.9
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.3e-88 327.8 306 56.9
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 2.1e-87 326.6 324 55.2
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.1e-87 326.6 300 58.0
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 2.7e-87 326.2 310 56.8
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.7e-87 326.2 341 53.7
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.5e-87 325.9 304 56.9
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.0e-86 324.3 304 56.2
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.3e-86 323.9 310 54.5
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 2.3e-86 323.2 252 65.5
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.0e-86 322.8 326 54.3
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.0e-86 322.8 300 56.3
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 5.1e-86 322.0 326 53.4
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.1e-85 320.9 310 56.1
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-85 320.9 325 53.8
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.3e-85 319.3 308 56.5
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 4.3e-85 318.9 326 53.7
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.4e-85 318.2 310 54.2
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 7.4e-85 318.2 341 55.4
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.3e-84 317.4 326 53.4
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.3e-84 315.1 347 51.9
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 3.1e-83 312.8 320 53.8
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 6.9e-83 311.6 286 57.0
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 6.9e-83 311.6 286 54.9
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.5e-82 310.5 298 56.4
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 2.0e-82 310.1 335 51.9
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.0e-82 310.1 304 54.9
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.7e-82 308.1 287 54.7
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.2e-81 306.6 252 60.7
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 6.5e-81 305.1 273 61.9
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.1e-80 304.3 288 54.2
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 4.2e-80 302.4 296 52.4
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 7.2e-80 301.6 306 52.0
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 7.9e-79 298.1 256 59.8
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.0e-78 297.7 283 53.7
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.8e-78 297.0 255 56.9
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 9.7e-77 291.2 289 52.6
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.3e-76 290.8 321 49.2
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 2.2e-76 290.0 290 51.4
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 2.8e-76 289.7 322 49.4
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 3.7e-76 289.3 320 50.0
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 3.7e-76 289.3 317 49.5
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.8e-76 288.9 319 49.8
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 3.1e-75 286.2 322 49.1
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 5.3e-75 285.4 320 50.3
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 9.1e-75 284.6 316 48.1
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.2e-74 284.3 259 55.2
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.5e-74 283.9 277 52.3
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 2.6e-74 283.1 289 53.6
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.6e-71 273.9 280 51.1
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.0e-70 271.2 254 57.5
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 3.9e-70 269.2 248 54.0
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.7e-68 263.8 249 53.0
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 3.5e-66 256.1 158 77.2
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.7e-65 253.8 241 55.2
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 3.8e-65 252.7 290 48.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 3.8e-65 252.7 252 49.6
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.0e-62 244.6 159 72.3
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 2.0e-58 230.3 179 60.3
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.8e-57 226.1 135 84.4
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.1e-56 224.6 235 51.5
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-52 211.1 150 68.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.7e-52 210.7 219 52.5
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 3.7e-52 209.5 218 49.1
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 4.8e-52 209.1 280 47.1
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 6.1e-47 192.2 225 49.3
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 8.8e-46 188.3 234 47.0
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.4e-43 181.0 202 47.0
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 4.5e-42 176.0 256 38.7
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.5e-40 171.0 172 51.2
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 7.5e-37 158.7 128 68.8
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 1.7e-36 157.5 229 42.4
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 8.6e-33 145.2 89 78.7
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.4e-27 127.9 88 71.6
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.8e-26 122.1 76 77.6
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 9.5e-24 115.2 77 68.8
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.6e-23 114.4 79 73.4
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 8.3e-20 102.1 56 87.5
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 4.1e-19 99.8 73 64.4
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 3.1e-14 83.6 123 34.1
ClCG09G013950 Citrullus lanatus HOM05D003948 ORTHO05D149678 2.1e-07 60.8 102 41.2


User provided reference genes

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