Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.6e-191 672.5 329 100.0
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 4.5e-170 601.3 327 89.0
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 8.5e-169 597.0 327 87.5
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.7e-167 592.0 327 87.2
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 4.4e-165 584.7 329 86.0
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.0e-146 522.7 326 78.8
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 6.6e-145 517.7 331 75.2
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 8.6e-145 517.3 338 75.4
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.1e-144 516.9 321 76.9
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.9e-144 516.2 332 76.2
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.3e-144 515.4 321 76.6
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 3.3e-144 515.4 337 75.4
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 4.3e-144 515.0 334 74.9
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 5.6e-144 514.6 337 75.7
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 7.3e-144 514.2 344 74.7
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 9.5e-144 513.8 329 75.1
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.6e-143 513.1 342 74.3
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.0e-142 508.8 332 75.6
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 3.0e-142 508.8 330 74.8
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.0e-141 506.1 341 71.3
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.6e-141 505.8 332 74.1
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 4.4e-141 505.0 334 76.6
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 5.7e-141 504.6 345 74.2
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 9.8e-141 503.8 334 73.1
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.3e-140 503.4 330 74.5
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.7e-140 503.1 330 74.8
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.7e-140 503.1 330 74.5
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.2e-140 502.7 327 76.1
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.2e-140 502.7 321 75.7
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.9e-140 501.5 330 74.2
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.9e-140 501.5 330 74.2
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 6.4e-140 501.1 334 75.1
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.4e-139 500.0 330 73.6
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.4e-139 500.0 330 75.2
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 5.4e-139 498.0 333 74.2
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 5.4e-139 498.0 318 75.8
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 7.0e-139 497.7 326 74.8
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 7.0e-139 497.7 326 74.8
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.0e-139 497.7 333 73.0
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 2.0e-138 496.1 326 74.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.3e-137 493.4 333 73.3
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.3e-137 493.4 279 85.7
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.7e-137 493.0 290 81.0
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.7e-137 493.0 333 72.7
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 3.0e-137 492.3 326 75.2
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.0e-137 492.3 326 72.7
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 3.0e-137 492.3 329 72.6
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 3.9e-137 491.9 331 72.2
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 3.9e-137 491.9 328 73.5
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 6.6e-137 491.1 328 73.8
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 6.6e-137 491.1 279 82.8
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 8.6e-137 490.7 328 73.2
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 2.5e-136 489.2 278 82.7
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 2.5e-136 489.2 328 73.5
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 2.5e-136 489.2 343 70.3
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 2.5e-136 489.2 328 73.5
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-136 488.8 328 73.5
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 7.3e-136 487.6 318 73.9
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 9.5e-136 487.3 325 72.0
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 9.5e-136 487.3 273 83.9
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 1.2e-135 486.9 345 70.1
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 4.7e-135 485.0 330 72.1
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 8.0e-135 484.2 321 73.8
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 8.0e-135 484.2 319 74.9
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.1e-134 483.8 328 70.4
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.3e-134 482.6 322 73.9
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.1e-134 482.3 325 72.0
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 3.1e-134 482.3 344 69.8
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.0e-134 481.9 340 71.2
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 4.0e-134 481.9 323 71.5
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.0e-134 481.9 329 72.9
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.2e-134 481.5 329 72.6
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.8e-134 481.1 288 80.2
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 8.9e-134 480.7 300 77.7
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.2e-133 480.3 330 72.7
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.5e-133 479.9 294 78.6
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.0e-133 479.6 323 74.6
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.6e-133 479.2 326 71.5
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.6e-133 479.2 326 71.5
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.6e-133 479.2 288 80.2
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 3.4e-133 478.8 273 83.2
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 3.4e-133 478.8 329 72.0
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 4.4e-133 478.4 276 80.4
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 5.8e-133 478.0 321 72.6
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 7.5e-133 477.6 333 70.0
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 7.5e-133 477.6 333 70.9
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 7.5e-133 477.6 291 78.0
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.3e-132 476.9 325 71.4
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 1.3e-132 476.9 323 72.1
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 2.2e-132 476.1 323 71.5
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 2.2e-132 476.1 299 75.6
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.9e-132 475.7 265 84.9
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.9e-131 473.0 308 74.4
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 7.0e-131 471.1 292 77.1
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 2.0e-130 469.5 327 70.3
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 2.7e-130 469.2 320 72.2
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 3.5e-130 468.8 321 72.0
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.6e-130 468.4 265 82.6
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 4.6e-130 468.4 327 70.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 6.0e-130 468.0 321 72.0
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.0e-129 467.2 323 71.8
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.0e-129 467.2 278 79.1
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.7e-129 466.5 321 71.3
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 3.9e-129 465.3 263 83.3
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.9e-128 463.0 321 71.3
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 2.5e-128 462.6 320 70.9
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 3.3e-128 462.2 322 71.7
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 7.3e-128 461.1 262 80.9
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 4.7e-127 458.4 329 69.3
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.4e-126 456.8 318 69.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 7.5e-125 451.1 242 87.2
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.3e-124 450.3 330 67.6
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 4.9e-124 448.4 242 85.5
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 4.1e-123 445.3 233 89.3
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 3.5e-122 442.2 289 73.7
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 3.0e-121 439.1 267 78.3
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.1e-115 420.6 268 75.4
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.4e-115 420.2 270 74.8
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.9e-115 419.9 324 62.7
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 4.1e-115 418.7 264 75.4
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.2e-114 417.2 240 84.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.1e-114 416.4 216 88.9
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.3e-113 412.9 221 86.9
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.8e-111 406.0 217 84.8
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 8.1e-111 404.4 219 85.8
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 3.1e-110 402.5 217 84.3
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 9.0e-110 401.0 228 83.3
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.2e-106 390.6 323 62.2
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 2.1e-106 389.8 208 87.5
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 8.7e-105 384.4 324 61.7
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 9.6e-104 380.9 267 69.3
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.6e-98 363.6 217 75.6
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 3.7e-95 352.4 322 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 6.2e-95 351.7 319 58.3
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 3.1e-94 349.4 290 63.8
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.7e-84 317.0 236 68.6
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.5e-80 303.9 293 54.6
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.5e-77 293.9 159 85.5
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 4.5e-77 292.4 154 87.7
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 1.7e-76 290.4 203 72.9
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 3.9e-73 279.3 217 65.9
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 9.7e-72 274.6 162 79.6
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 1.4e-70 270.8 236 60.6
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 6.9e-70 268.5 209 65.1
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.5e-64 250.8 215 60.9
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.7e-55 220.7 129 79.1
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.1e-50 203.8 147 66.7
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 3.4e-40 169.9 174 54.6
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 6.0e-21 105.9 108 59.3
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 8.0e-18 95.5 83 57.8
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 9.8e-16 88.6 114 50.9
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 4.9e-15 86.3 49 75.5
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 7.0e-14 82.4 110 43.6


User provided reference genes

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