Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014604 Sechium edule HOM05D007830 ORTHO05D009947 5.2e-243 844.7 729 100.0
ClCG10G018110 Citrullus lanatus HOM05D007830 ORTHO05D009947 4.2e-168 595.9 728 78.8
MELO3C009562.2 Cucumis melo HOM05D007830 ORTHO05D009947 5.7e-149 532.3 731 76.2
CsaV3_3G038190 Cucumis sativus L. HOM05D007830 ORTHO05D009947 1.2e-141 508.1 731 74.6
QL03p010264 Quercus lobata HOM05D007830 ORTHO05D009947 2.7e-82 310.8 731 62.1
Hma1.2p1_0052F.1_g030410 Hydrangea macrophylla HOM05D007830 ORTHO05D009947 3.0e-81 307.4 730 37.5
QL03p010498 Quercus lobata HOM05D007830 ORTHO05D009947 3.3e-80 303.9 731 63.2
Cfa006760 Carpinus fangiana HOM05D007830 ORTHO05D009947 7.4e-80 302.8 731 62.7
CiPaw.07G037200 Carya illinoinensis HOM05D007830 ORTHO05D009947 9.0e-78 295.8 733 48.2
Potri.005G003200 Populus trichocarpa HOM05D007830 ORTHO05D009947 9.0e-78 295.8 728 58.1
TWI56G0273 Tripterygium wilfordii HOM05D007830 ORTHO05D009947 4.5e-77 293.5 733 53.1
Lj5g0007590 Lotus japonicus HOM05D007830 ORTHO05D009947 3.8e-76 290.4 726 56.3
Ca_10196_v3 Cicer arietinum L. HOM05D007830 ORTHO05D009947 6.4e-76 289.7 728 55.2
Thecc.05G329100 Theobroma cacao HOM05D007830 ORTHO05D009947 1.9e-75 288.1 681 53.0
Manes.09G180800 Manihot esculenta HOM05D007830 ORTHO05D009947 3.2e-75 287.3 729 58.8
Duzib128G1385 Durio zibethinus HOM05D007830 ORTHO05D009947 5.5e-75 286.6 654 53.1
MD04G1187000 Malus domestica HOM05D007830 ORTHO05D009947 3.5e-74 283.9 680 64.4
Sabra05G0014700 Salix brachista HOM05D007830 ORTHO05D009947 4.6e-74 283.5 728 55.1
Actinidia11685 Actinidia chinensis HOM05D007830 ORTHO05D009947 2.3e-73 281.2 695 53.7
Glyma.20G092100 Glycine max HOM05D007830 ORTHO05D009947 5.1e-73 280.0 728 51.1
Psat6g155440 Pisum sativum HOM05D007830 ORTHO05D009947 1.9e-72 278.1 727 54.9
Sabra05G0000600 Salix brachista HOM05D007830 ORTHO05D009947 9.6e-72 275.8 728 54.9
Phvul.007G204600 Phaseolus vulgaris HOM05D007830 ORTHO05D009947 1.3e-71 275.4 728 52.3
TPR.G2587 Trifolium pratense HOM05D007830 ORTHO05D009947 4.8e-71 273.5 716 48.9
Medtr1g484840 Medicago truncatula HOM05D007830 ORTHO05D009947 1.4e-70 271.9 717 48.7
Dinv24509 Davidia involucrata HOM05D007830 ORTHO05D009947 1.8e-70 271.6 729 59.8
Haze_03995 Corylus avellana HOM05D007830 ORTHO05D009947 5.3e-70 270.0 723 61.3
PGR031G1570 Punica granatum HOM05D007830 ORTHO05D009947 2.0e-69 268.1 733 53.5
Potri.013G002800 Populus trichocarpa HOM05D007830 ORTHO05D009947 6.5e-68 263.1 731 58.1
VMungo0720G1493 Vigna mungo HOM05D007830 ORTHO05D009947 4.6e-66 256.9 728 55.9
Prupe.6G305500 Prunus persica HOM05D007830 ORTHO05D009947 5.7e-64 250.0 729 62.1
COL.COLO4_05513 Corchorus olitorius HOM05D007830 ORTHO05D009947 8.2e-63 246.1 681 49.5
FAN05G5807 Fragaria x ananassa HOM05D007830 ORTHO05D009947 2.7e-58 231.1 729 60.5
Rhsim11G0102200 Rhododendron simsii HOM05D007830 ORTHO05D009947 4.6e-58 230.3 735 51.8
FAN02G3946 Fragaria x ananassa HOM05D007830 ORTHO05D009947 3.9e-57 227.3 730 60.4
CANSAT54G0214 Cannabis sativa HOM05D007830 ORTHO05D009947 6.7e-57 226.5 684 57.0
RcHm_v2.0_Chr3g0458391 Rosa chinensis HOM05D007830 ORTHO05D009947 8.7e-57 226.1 729 60.5
FAN09G0226 Fragaria x ananassa HOM05D007830 ORTHO05D009947 3.3e-56 224.2 729 60.1
Gohir.D11G285900 Gossypium hirsutum HOM05D007830 ORTHO05D009947 2.2e-55 221.5 687 52.5
Gorai.007G309100 Gossypium raimondii HOM05D007830 ORTHO05D009947 2.2e-55 221.5 687 52.5
DCAR_029288 Daucus carota HOM05D007830 ORTHO05D009947 5.3e-54 216.9 705 47.8
MSTRG.16426 Avicennia marina HOM05D007830 ORTHO05D009947 1.5e-53 215.3 730 53.6
Cc02_g35800 Coffea canephora HOM05D007830 ORTHO05D009947 1.6e-50 205.3 729 50.8
Migut.B00878 Erythranthe guttata HOM05D007830 ORTHO05D009947 2.1e-50 204.9 736 53.3
SGA_v2.0_scaffold117G32413 Striga asiatica HOM05D007830 ORTHO05D009947 2.7e-50 204.5 685 54.9
FvH4_6g08430 Fragaria vesca HOM05D007830 ORTHO05D009947 2.3e-49 201.4 729 59.1
AUR62000469 Chenopodium quinoa HOM05D007830 ORTHO05D009947 8.8e-49 199.5 740 37.6
Oeu029182.1 Olea europaea HOM05D007830 ORTHO05D009947 1.5e-48 198.7 708 59.6
Ciclev10011168m.g Citrus clementina HOM05D007830 ORTHO05D009947 2.0e-48 198.4 455 62.2
FAN14G2917 Fragaria x ananassa HOM05D007830 ORTHO05D009947 3.3e-48 197.6 729 59.0
CAN.G1248.21 Capsicum annuum HOM05D007830 ORTHO05D009947 1.3e-47 195.7 734 43.2
Nitab4.5_0005904g0050 Nicotiana tabacum HOM05D007830 ORTHO05D009947 1.7e-47 195.3 654 40.1
AUR62006810 Chenopodium quinoa HOM05D007830 ORTHO05D009947 3.7e-47 194.1 743 42.9
Peaxi162Scf00357g00014 Petunia axillaris HOM05D007830 ORTHO05D009947 1.4e-46 192.2 618 45.3
Gohir.A11G275500 Gossypium hirsutum HOM05D007830 ORTHO05D009947 2.0e-45 188.3 687 56.3
MD12G1200400 Malus domestica HOM05D007830 ORTHO05D009947 6.1e-42 176.8 453 58.9
Atru.chr12.1550 Acer truncatum HOM05D007830 ORTHO05D009947 3.0e-41 174.5 190 47.4
Lj5P319T39 Lonicera japonica HOM05D007830 ORTHO05D009947 5.2e-41 173.7 606 67.5
arahy.Tifrunner.gnm1.ann1.B5RE77 Arachis hypogaea HOM05D007830 ORTHO05D009947 5.7e-40 170.2 404 59.4
Eucgr.H01319 Eucalyptus grandis HOM05D007830 ORTHO05D009947 9.7e-40 169.5 417 60.4
MBI06_g27503_MAGBIO Magnolia biondii HOM05D007830 ORTHO05D009947 6.3e-39 166.8 732 52.3
Hund21836 Selenicereus undatus HOM05D007830 ORTHO05D009947 1.8e-38 165.2 729 54.5
Aqoxy2G02518 Aquilegia oxysepala HOM05D007830 ORTHO05D009947 7.0e-38 163.3 616 57.8
Lalb_Chr18g0046201 Lupinus albus HOM05D007830 ORTHO05D009947 2.6e-37 161.4 362 45.3
GSVIVG01031321001 Vitis vinifera HOM05D007830 ORTHO05D009947 2.2e-36 158.3 209 44.0
Ah.10g026910 Amaranthus hybridus HOM05D007830 ORTHO05D009947 2.5e-35 154.8 732 52.0
unitig_578.g15943 Utricularia gibba HOM05D007830 ORTHO05D009947 2.5e-35 154.8 653 51.3
PGSC0003DMG400018287 Solanum tuberosum HOM05D007830 ORTHO05D009947 8.0e-34 149.8 401 38.2
Nitab4.5_0002485g0040 Nicotiana tabacum HOM05D007830 ORTHO05D009947 4.0e-33 147.5 415 48.2
Glyma.20G092800 Glycine max HOM05D007830 ORTHO05D009947 6.7e-33 146.7 188 44.7
Lsat_1_v5_gn_7_63920 Lactuca sativa HOM05D007830 ORTHO05D009947 2.0e-32 145.2 693 39.0
HanXRQChr03g0088351 Helianthus annuus HOM05D007830 ORTHO05D009947 9.7e-32 142.9 726 40.8
Sopen01g044630 Solanum pennellii HOM05D007830 ORTHO05D009947 1.3e-31 142.5 229 39.7
Nn3g21915 Nelumbo nucifera HOM05D007830 ORTHO05D009947 2.2e-31 141.7 181 42.5
PSO761G0258 Papaver somniferum HOM05D007830 ORTHO05D009947 1.4e-30 139.0 149 47.7
PSO210G0421 Papaver somniferum HOM05D007830 ORTHO05D009947 4.1e-30 137.5 149 47.7
Zm00001eb060630 Zea mays HOM05D007830 ORTHO05D009947 3.7e-23 114.4 648 41.0
Actinidia09334 Actinidia chinensis HOM05D007830 ORTHO05D009947 1.8e-22 112.1 101 54.5
CDE05G0555 Ceratophyllum demersum HOM05D007830 ORTHO05D009947 8.5e-20 103.2 366 44.0
ATR0796G327 Amborella trichopoda HOM05D007830 ORTHO05D009947 4.2e-19 100.9 152 40.1
Os03g0795400 Oryza sativa ssp. japonica HOM05D007830 ORTHO05D009947 1.2e-18 99.4 650 45.4
Solyc01g101150.3 Solanum lycopersicum HOM05D007830 ORTHO05D009947 1.2e-10 72.8 72 51.4
PGR031G2669 Punica granatum HOM05D007830 ORTHO05D009947 1.2e-08 66.2 265 22.6
Oeu049215.1 Olea europaea HOM05D006895 ORTHO05D008605 1.7e-07 62.4 105 32.4
SEGI_29222 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 2.9e-07 61.6 144 27.1
Ciclev10018977m.g Citrus clementina HOM05D002453 ORTHO05D002107 6.4e-07 60.5 125 32.0
Aqoxy2G02657 Aquilegia oxysepala HOM05D007409 ORTHO05D009264 8.3e-07 60.1 116 29.3
CsaV3_UNG230140 Cucumis sativus L. HOM05D001895 ORTHO05D009264 8.3e-07 60.1 185 25.4
Dinv44256 Davidia involucrata HOM05D007409 ORTHO05D009264 8.3e-07 60.1 100 30.0
Lalb_Chr18g0059371 Lupinus albus HOM05D002986 ORTHO05D007611 1.4e-06 59.3 180 28.3
SHI10915 Sapria himalayana HOM05D006749 ORTHO05D008352 1.4e-06 59.3 151 27.2
AagrBONN_evm.TU.Sc2ySwM_117.2351 Anthoceros agrestis HOM05D007830 ORTHO05D003673 1.8e-06 58.9 128 26.6
Potri.010G148700 Populus trichocarpa HOM05D007409 ORTHO05D009264 1.8e-06 58.9 120 30.0
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.2e-06 58.2 145 27.6
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.2e-06 58.2 145 27.6
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 3.2e-06 58.2 143 27.3
arahy.Tifrunner.gnm1.ann1.M3LQ04 Arachis hypogaea HOM05D002453 ORTHO05D002107 5.4e-06 57.4 130 26.2
QL01p037328 Quercus lobata HOM05D007402 ORTHO05D003673 5.4e-06 57.4 157 24.2
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 7.0e-06 57.0 142 26.8
arahy.Tifrunner.gnm1.ann1.SFY2YX Arachis hypogaea HOM05D002453 ORTHO05D002107 9.2e-06 56.6 125 27.2
ClCG06G004440 Citrullus lanatus HOM05D007409 ORTHO05D009264 9.2e-06 56.6 126 25.4
MELO3C021257.2 Cucumis melo HOM05D007409 ORTHO05D009264 9.2e-06 56.6 126 25.4
HanXRQChr14g0427751 Helianthus annuus HOM05D007409 ORTHO05D009264 9.2e-06 56.6 105 28.6
Manes.11G109300 Manihot esculenta HOM05D007409 ORTHO05D009264 9.2e-06 56.6 113 29.2


User provided reference genes

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