Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 0.0e+00 2238.0 1233 100.0
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 0.0e+00 1775.0 1237 82.7
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 0.0e+00 1763.4 1237 82.3
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 0.0e+00 1745.7 1236 81.8
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 0.0e+00 1651.0 1235 78.0
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 1.3e-291 1006.9 1289 56.1
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 1.9e-269 933.3 1262 54.2
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 9.3e-269 931.0 1204 55.2
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 8.7e-259 897.9 1266 51.9
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 2.5e-258 896.3 1259 51.6
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 8.2e-257 891.3 1260 52.3
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 2.2e-254 883.2 1262 51.7
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 5.5e-253 878.6 1261 51.4
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 6.1e-252 875.2 1216 51.2
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 7.9e-252 874.8 1262 51.0
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.4e-247 859.4 1264 50.2
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 7.7e-247 858.2 1259 50.4
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 2.2e-246 856.7 1266 50.2
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.8e-246 855.9 1262 50.6
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 6.1e-244 848.6 1205 51.3
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 7.9e-244 848.2 1264 49.6
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 7.9e-244 848.2 1281 49.8
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 4.4e-242 842.4 1260 49.8
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 1.8e-240 837.0 1256 48.8
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.2e-239 834.3 1261 50.5
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 2.0e-239 833.6 1253 49.8
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 1.6e-236 823.9 1266 48.9
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 3.5e-231 806.2 1281 48.6
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.0e-230 804.7 1257 47.9
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 5.0e-230 802.4 1249 48.8
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.7e-228 796.6 1262 47.7
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.4e-227 794.3 1261 48.1
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.5e-226 790.8 1259 49.2
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 7.0e-224 781.9 1311 47.3
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 7.0e-224 781.9 1257 46.3
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.6e-223 780.8 1252 47.4
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 1.3e-222 777.7 1233 47.3
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 4.2e-221 772.7 1257 48.4
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 4.2e-221 772.7 1248 45.5
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 5.5e-221 772.3 1410 44.8
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 2.7e-220 770.0 1260 47.5
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 4.7e-220 769.2 1263 47.3
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.4e-219 767.7 1259 47.4
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 4.0e-219 766.1 1224 48.0
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 6.8e-219 765.4 1256 46.6
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 1.3e-214 751.1 1249 48.4
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 4.4e-210 736.1 1161 49.2
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 3.2e-208 729.9 1273 45.8
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 5.4e-208 729.2 1282 46.4
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 3.0e-206 723.4 1261 46.4
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 1.9e-205 720.7 1306 45.1
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 8.1e-196 688.7 1258 44.0
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 8.6e-190 668.7 1263 44.2
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 7.6e-186 655.6 1288 40.5
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 9.2e-184 648.7 1273 44.7
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 1.6e-183 647.9 1264 39.1
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 4.7e-180 636.3 1252 43.7
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 5.2e-179 632.9 1280 44.1
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.4e-177 625.9 1071 45.8
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 8.4e-177 625.5 1263 44.3
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 2.4e-176 624.0 1269 44.1
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 4.6e-175 619.8 1284 42.4
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 6.6e-174 615.9 1297 39.9
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 1.3e-172 611.7 1208 44.0
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 9.9e-170 602.1 1102 44.0
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 4.9e-169 599.7 1181 44.1
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.5e-157 561.6 1243 42.2
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 1.9e-157 561.2 1250 41.8
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 9.6e-157 558.9 1275 42.8
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 3.7e-156 557.0 1184 43.1
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 1.1e-155 555.4 1049 43.7
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 1.8e-155 554.7 1249 41.5
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 5.5e-152 543.1 1213 40.2
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 1.0e-150 538.9 1236 39.5
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 6.9e-147 526.2 1284 39.6
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 1.1e-144 518.8 1242 39.4
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 1.9e-144 518.1 1230 37.9
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 4.2e-144 516.9 1254 40.0
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 7.2e-144 516.2 1246 40.4
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 6.7e-142 509.6 1241 39.5
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 1.4e-136 491.9 1292 39.2
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 1.9e-136 491.5 1287 37.9
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 2.0e-133 481.5 1036 43.5
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 4.8e-132 476.9 1278 37.9
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 3.1e-131 474.2 1206 36.2
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 5.9e-130 469.9 854 47.4
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 1.0e-129 469.2 1248 39.4
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 5.5e-128 463.4 1232 35.7
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 7.2e-128 463.0 1264 36.8
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 1.4e-126 458.8 1256 36.1
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 5.2e-126 456.8 1264 36.6
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 5.2e-126 456.8 1264 36.6
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 8.8e-126 456.1 1257 36.0
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 4.1e-123 447.2 1250 36.2
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.8e-118 431.8 1249 38.6
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 6.7e-118 429.9 1233 35.4
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 1.3e-116 425.6 584 48.8
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 1.7e-116 425.2 1150 39.3
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 3.5e-114 417.5 1040 36.4
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 8.8e-110 402.9 737 49.7
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 5.5e-104 383.6 1294 34.4
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 3.3e-96 357.8 437 52.4
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 4.3e-96 357.5 1073 31.0
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 1.2e-95 355.9 1289 34.0
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.1e-95 355.1 910 33.5
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.0e-85 322.0 436 49.3
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 3.4e-85 321.2 1062 37.3
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 9.5e-80 303.1 1149 33.9
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 6.2e-79 300.4 1344 31.0
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 8.9e-78 296.6 1130 30.3
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 2.6e-77 295.0 753 34.8
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.6e-73 280.4 325 55.1
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.2e-68 265.4 1315 30.4
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 6.4e-68 263.8 1256 31.9
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 9.0e-62 243.4 316 50.9
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 2.4e-59 235.3 274 53.3
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 6.6e-57 227.3 222 59.9
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 2.8e-55 221.9 1048 31.2
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 2.9e-44 185.3 198 53.0
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 7.1e-43 180.6 432 36.1
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.3e-41 176.4 706 29.3
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 9.0e-38 163.7 465 32.9
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 2.9e-36 158.7 217 50.2
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 7.1e-35 154.1 140 62.1
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 2.7e-34 152.1 155 57.4
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 3.0e-33 148.7 454 30.4
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 2.6e-29 135.6 742 27.1
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 4.6e-26 124.8 100 56.0
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 6.7e-25 120.9 139 46.8
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.5e-24 119.0 234 40.2
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 8.2e-23 114.0 1343 22.8
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 4.1e-22 111.7 66 75.8
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.2e-21 110.2 131 58.0
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.5e-21 109.8 165 42.4
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 1.6e-18 99.8 131 52.7
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 6.1e-18 97.8 129 54.3
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 1.8e-17 96.3 180 36.7
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 5.7e-16 91.3 665 34.1
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 2.2e-15 89.4 139 38.8
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 4.1e-14 85.1 148 41.9
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 7.0e-14 84.3 110 43.6
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 1.2e-13 83.6 217 30.4
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 8.5e-12 77.4 172 34.9
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 5.3e-06 58.2 48 64.6


User provided reference genes

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