Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 3.9e-85 318.2 170 100.0
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 8.0e-54 214.2 165 79.4
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 1.8e-53 213.0 165 78.8
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 5.7e-52 208.0 165 77.0
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 2.0e-49 199.5 160 73.8
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 8.6e-32 141.0 161 54.0
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.6e-30 136.7 163 53.4
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 4.7e-30 135.2 180 50.0
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 2.3e-29 132.9 167 53.3
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 2.2e-27 126.3 157 51.0
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 2.2e-27 126.3 163 50.9
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 3.8e-27 125.6 160 52.5
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 1.4e-26 123.6 163 49.7
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 2.4e-26 122.9 169 52.7
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 4.1e-26 122.1 174 48.9
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 9.2e-26 120.9 136 57.4
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 1.2e-25 120.6 175 50.9
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 1.2e-25 120.6 174 48.9
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.6e-25 120.2 160 51.2
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 3.5e-25 119.0 182 47.3
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.5e-25 119.0 160 48.8
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 4.6e-25 118.6 165 48.5
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 2.3e-24 116.3 166 47.0
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 5.1e-24 115.2 166 48.8
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.5e-23 113.6 156 47.4
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 5.6e-23 111.7 169 46.2
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 9.6e-23 110.9 172 50.6
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 2.1e-22 109.8 163 48.5
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.6e-22 109.0 158 47.5
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 4.7e-22 108.6 165 47.3
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 6.2e-22 108.2 166 45.2
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 3.1e-21 105.9 163 47.2
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 4.0e-21 105.5 167 50.9
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 4.0e-21 105.5 157 47.8
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 2.6e-20 102.8 119 54.6
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.4e-20 102.4 161 44.1
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 5.8e-20 101.7 171 48.0
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 1.7e-19 100.1 138 55.1
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.8e-19 99.0 162 43.8
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 3.8e-19 99.0 104 60.6
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.9e-19 98.6 162 43.8
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 8.4e-19 97.8 158 49.4
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 2.4e-18 96.3 160 46.2
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 2.4e-18 96.3 186 42.5
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 7.1e-18 94.7 113 54.9
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.2e-17 94.0 152 46.7
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 1.2e-17 94.0 165 41.8
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.1e-17 93.2 172 40.7
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 2.1e-17 93.2 125 52.8
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 3.5e-17 92.4 159 45.9
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 6.0e-17 91.7 135 49.6
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.0e-16 90.9 165 41.8
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.3e-16 90.5 153 45.1
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 1.7e-16 90.1 152 46.1
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 3.9e-16 89.0 158 43.0
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 6.6e-16 88.2 144 48.6
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 6.6e-16 88.2 167 42.5
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 4.3e-15 85.5 110 48.2
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 5.6e-15 85.1 151 42.4
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 5.6e-15 85.1 152 44.1
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 3.6e-14 82.4 99 55.6
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 6.2e-14 81.6 179 36.9
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 6.2e-14 81.6 148 48.0
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 8.1e-14 81.3 172 40.1
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.8e-13 80.1 173 41.0
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 1.8e-13 80.1 159 40.3
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 2.4e-13 79.7 150 40.7
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 2.4e-13 79.7 90 54.4
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 4.0e-13 79.0 80 60.0
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 1.2e-12 77.4 97 52.6
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 1.2e-12 77.4 109 44.0
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 3.4e-12 75.9 145 40.7
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 3.4e-12 75.9 153 43.8
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 3.4e-12 75.9 134 46.3
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 4.5e-12 75.5 117 50.4
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 5.8e-12 75.1 106 47.2
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 5.8e-12 75.1 127 48.0
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 7.6e-12 74.7 85 55.3
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 9.9e-12 74.3 118 44.1
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 9.9e-12 74.3 115 46.1
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 1.7e-11 73.6 120 46.7
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 2.9e-11 72.8 115 45.2
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 6.4e-11 71.6 157 40.1
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 6.4e-11 71.6 144 39.6
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 8.4e-11 71.2 87 57.5
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.1e-10 70.9 136 43.4
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 1.4e-10 70.5 118 47.5
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 1.4e-10 70.5 105 45.7
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 2.4e-10 69.7 158 41.1
THA.LOC104799749 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 3.2e-10 69.3 128 45.3
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 7.1e-10 68.2 122 46.7
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 1.2e-09 67.4 73 57.5
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 1.2e-09 67.4 112 49.1
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 1.6e-09 67.0 118 46.6
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 1.6e-09 67.0 130 41.5
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 3.5e-09 65.9 138 40.6
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 3.5e-09 65.9 98 41.8
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 4.6e-09 65.5 144 39.6
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 4.6e-09 65.5 117 47.0
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 7.9e-09 64.7 144 38.9
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 1.0e-08 64.3 97 51.5
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 1.0e-08 64.3 154 32.5
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 1.3e-08 63.9 117 45.3
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 2.3e-08 63.2 142 38.0
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 3.0e-08 62.8 117 47.0
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 3.0e-08 62.8 163 35.6
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 1.5e-07 60.5 107 43.9
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.9e-07 60.1 104 38.5
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.9e-07 60.1 108 39.8
Aa31LG10G7560 Aethionema arabicum HOM05D006872 ORTHO05D006261 2.5e-07 59.7 101 49.5
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 2.5e-07 59.7 153 35.9
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 2.5e-07 59.7 86 44.2
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 3.3e-07 59.3 145 37.2
RcHm_v2.0_Chr3g0488241 Rosa chinensis HOM05D006872 ORTHO05D006261 3.3e-07 59.3 49 61.2
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 5.6e-07 58.5 183 34.4
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 7.4e-07 58.2 151 35.8
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 9.6e-07 57.8 70 55.7
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 1.3e-06 57.4 167 36.5
Medtr2g102560 Medicago truncatula HOM05D006872 ORTHO05D006261 1.3e-06 57.4 64 54.7
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 2.1e-06 56.6 108 40.7
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 2.8e-06 56.2 151 35.8
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 2.8e-06 56.2 153 34.6
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 2.8e-06 56.2 85 42.4
Prupe.6G139500 Prunus persica HOM05D021165 ORTHO05D006261 3.7e-06 55.8 95 40.0
Medtr4g085050 Medicago truncatula HOM05D006872 ORTHO05D006261 4.8e-06 55.5 64 56.2
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 4.8e-06 55.5 90 42.2
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 6.2e-06 55.1 43 62.8
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 6.2e-06 55.1 66 45.5
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 8.1e-06 54.7 66 53.0
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 8.1e-06 54.7 108 37.0
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 8.1e-06 54.7 91 40.7


User provided reference genes

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