Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 1.5e-236 822.4 404 100.0
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 1.0e-216 756.5 418 92.1
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 7.9e-201 703.7 419 86.2
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 1.3e-38 164.9 231 50.2
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 1.3e-38 164.9 231 50.2
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 2.5e-37 160.6 127 70.9
SabraPtG0006400 Salix brachista HOM05D012647 ORTHO05D014727 9.5e-37 158.7 103 80.6
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 1.2e-34 151.8 157 55.4
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 5.4e-32 142.9 79 87.3
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 8.6e-30 135.6 126 63.5
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 8.6e-30 135.6 126 63.5
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 8.6e-30 135.6 126 63.5
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 8.6e-30 135.6 126 63.5
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 1.9e-29 134.4 112 69.6
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 1.2e-28 131.7 97 76.3
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 1.2e-28 131.7 97 76.3
Atru.chr9.2550 Acer truncatum HOM05D010190 ORTHO05D009823 2.3e-27 127.5 67 92.5
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 4.0e-27 126.7 81 77.8
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 5.2e-27 126.3 116 63.8
Nitab4.5_0001170g0050 Nicotiana tabacum HOM05D010190 ORTHO05D011667 6.8e-27 125.9 157 49.7
RcHm_v2.0_Chr4g0392721 Rosa chinensis HOM05D008016 ORTHO05D004271 6.8e-27 125.9 79 79.7
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 1.2e-26 125.2 80 80.0
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 5.8e-26 122.9 79 77.2
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.1e-24 118.6 111 62.2
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 1.9e-24 117.9 193 44.0
Sed0006095 Sechium edule HOM05D010190 ORTHO05D010055 4.1e-24 116.7 61 95.1
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 7.8e-23 112.5 73 82.2
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 1.3e-22 111.7 206 41.3
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 1.7e-22 111.3 86 66.3
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 3.3e-21 107.1 55 92.7
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 1.6e-20 104.8 104 59.6
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 2.8e-20 104.0 58 86.2
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 8.1e-20 102.4 125 54.4
arahy.Tifrunner.gnm1.ann1.60YYL0 Arachis hypogaea HOM05D010190 ORTHO05D009823 1.2e-18 98.6 75 70.7
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 2.0e-18 97.8 58 81.0
Gohir.D07G151450 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.0e-18 97.8 128 53.1
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 4.4e-18 96.7 104 52.9
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 5.8e-18 96.3 54 85.2
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 7.6e-18 95.9 54 83.3
Aa31csc553G20 Aethionema arabicum HOM05D010190 ORTHO05D021180 1.3e-17 95.1 130 48.5
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.3e-17 95.1 54 83.3
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 2.9e-17 94.0 119 53.8
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 2.9e-17 94.0 119 53.8
Peaxi162Scf00608g00016 Petunia axillaris HOM05D000680 ORTHO05D005619 3.8e-17 93.6 69 73.9
Gohir.A02G134102 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.4e-16 91.7 45 97.8
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.9e-16 91.3 50 88.0
Oeu012768.1 Olea europaea HOM05D007952 ORTHO05D009823 2.4e-16 90.9 74 66.2
Lsat_1_v5_gn_2_20561 Lactuca sativa HOM05D010488 ORTHO05D011667 1.2e-15 88.6 45 97.8
MD00G1140100 Malus domestica HOM05D008016 ORTHO05D004271 1.2e-15 88.6 50 86.0
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 7.8e-15 85.9 44 90.9
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 1.3e-14 85.1 44 90.9
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 2.3e-14 84.3 47 89.4
Gohir.1Z049580 Gossypium hirsutum HOM05D008016 ORTHO05D004271 6.6e-14 82.8 41 97.6
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 6.6e-14 82.8 61 73.8
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-13 82.0 97 56.7
TAR626G1139 Trochodendron aralioides HOM05D000301 ORTHO05D000303 1.9e-13 81.3 53 79.2
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 9.6e-13 79.0 63 69.8
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.2e-12 78.6 203 36.0
Nitab4.5_0004137g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 3.6e-12 77.0 45 82.2
BolC7t41700H Brassica oleracea HOM05D010190 ORTHO05D009823 4.7e-12 76.6 61 68.9
Sc17g0002440 Simmondsia chinensis HOM05D010190 ORTHO05D000119 4.7e-12 76.6 59 71.2
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 1.4e-11 75.1 38 94.7
BolSC49t61153H Brassica oleracea HOM05D008016 ORTHO05D010588 1.8e-11 74.7 156 43.6
CAN.G2251.1 Capsicum annuum HOM05D010190 ORTHO05D011667 2.4e-11 74.3 41 82.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 2.4e-11 74.3 90 53.3
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 3.1e-11 73.9 44 79.5
Peaxi162Scf00080g00520 Petunia axillaris HOM05D008037 ORTHO05D004271 4.0e-11 73.6 55 69.1
Solyc11g044665.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 5.3e-11 73.2 69 59.4
BraSC179t45783Z Brassica rapa HOM05D008016 ORTHO05D004271 1.2e-10 72.0 59 64.4
Nitab4.5_0003382g0050 Nicotiana tabacum HOM05D010190 ORTHO05D011667 1.5e-10 71.6 38 92.1
HPP92_028386 Vanilla planifolia HOM05D009726 ORTHO05D010055 2.6e-10 70.9 59 62.7
SEGI_20804 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 5.8e-10 69.7 75 50.7
TPR.G384 Trifolium pratense HOM05D010190 ORTHO05D010933 7.6e-10 69.3 86 47.7
Nitab4.5_0000317g0030 Nicotiana tabacum HOM05D010190 ORTHO05D009823 9.9e-10 68.9 38 81.6
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.2e-09 67.8 72 62.5
Nitab4.5_0000002g0310 Nicotiana tabacum HOM05D010190 ORTHO05D004271 4.9e-09 66.6 38 86.8
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 8.4e-09 65.9 33 93.9
Manes.07G046200 Manihot esculenta HOM05D008037 ORTHO05D004271 8.4e-09 65.9 53 66.0
Oeu022560.1 Olea europaea HOM05D007952 ORTHO05D009823 8.4e-09 65.9 32 93.8
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 8.4e-09 65.9 45 82.2
CsaV3_4G029840 Cucumis sativus L. HOM05D010190 ORTHO05D009823 1.1e-08 65.5 54 63.0
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 1.1e-08 65.5 46 69.6
CiPaw.14G028800 Carya illinoinensis HOM05D008016 ORTHO05D004271 1.4e-08 65.1 42 76.2
Nitab4.5_0001628g0020 Nicotiana tabacum HOM05D010190 ORTHO05D004271 1.9e-08 64.7 37 81.1
Nitab4.5_0004552g0010 Nicotiana tabacum HOM05D000796 ORTHO05D009823 2.4e-08 64.3 50 64.0
BcaC05g27379 Brassica carinata HOM05D008016 ORTHO05D021751 3.2e-08 63.9 42 78.6
CAN.G100.35 Capsicum annuum HOM05D008016 ORTHO05D010588 5.4e-08 63.2 30 93.3
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 5.4e-08 63.2 45 80.0
Lalb_Chr20g0115041 Lupinus albus HOM05D008016 ORTHO05D004271 7.1e-08 62.8 58 60.3
arahy.Tifrunner.gnm1.ann1.8WK9L8 Arachis hypogaea HOM05D020811 ORTHO05D018485 2.1e-07 61.2 55 56.4
Sc02g0004570 Simmondsia chinensis HOM05D008037 ORTHO05D004271 2.1e-07 61.2 118 38.1
arahy.Tifrunner.gnm1.ann1.JWI1UU Arachis hypogaea HOM05D009726 ORTHO05D010588 2.7e-07 60.8 61 57.4
DCAR_017252 Daucus carota HOM05D010488 ORTHO05D011667 4.6e-07 60.1 31 93.5
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.6e-07 60.1 43 72.1
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.6e-07 60.1 43 72.1
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.6e-07 60.1 43 72.1
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 4.6e-07 60.1 43 72.1
unitig_60.g25913 Utricularia gibba HOM05D010190 ORTHO05D011667 4.6e-07 60.1 39 79.5
SGA_v2.0_scaffold255G45479 Striga asiatica HOM05D015035 ORTHO05D010933 6.0e-07 59.7 41 68.3
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 7.8e-07 59.3 37 81.1
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 7.8e-07 59.3 37 81.1
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 7.8e-07 59.3 37 81.1
Nn031s41604 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.8e-07 59.3 37 81.1
Nn233s45560 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.8e-07 59.3 37 81.1
Nn241s45689 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.8e-07 59.3 37 81.1
Nn6g33131 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.8e-07 59.3 37 81.1
Nn6g33484 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.8e-07 59.3 37 81.1
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 1.0e-06 58.9 37 78.4
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 1.0e-06 58.9 41 70.7
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 1.0e-06 58.9 58 58.6
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 1.0e-06 58.9 58 58.6
arahy.Tifrunner.gnm1.ann1.54SFA9 Arachis hypogaea HOM05D008037 ORTHO05D004271 1.3e-06 58.5 47 72.3
Zm00001eb129280 Zea mays HOM05D034373 ORTHO05D021180 1.3e-06 58.5 32 90.6
arahy.Tifrunner.gnm1.ann1.P1C4N2 Arachis hypogaea HOM05D010190 ORTHO05D011667 1.7e-06 58.2 40 72.5
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.7e-06 58.2 30 90.0
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 3.9e-06 57.0 29 93.1
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 6.6e-06 56.2 37 78.4
Phvul.009G038333 Phaseolus vulgaris HOM05D007952 ORTHO05D009823 6.6e-06 56.2 37 78.4
CAN.G1186.47 Capsicum annuum HOM05D007952 ORTHO05D009823 8.7e-06 55.8 67 52.2
Oeu011728.3 Olea europaea HOM05D002681 ORTHO05D003372 8.7e-06 55.8 29 89.7


User provided reference genes

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