Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.0e-204 716.5 356 100.0
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 9.5e-174 613.6 356 85.1
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 7.8e-168 594.0 356 82.9
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 4.0e-164 581.6 352 81.2
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 1.3e-133 480.3 288 81.6
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 5.7e-118 428.3 353 62.3
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 5.7e-118 428.3 360 61.4
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.5e-115 420.2 356 61.5
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 7.7e-115 417.9 367 60.2
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 6.5e-114 414.8 362 60.8
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 8.5e-114 414.5 336 62.2
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 8.5e-114 414.5 347 60.2
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.6e-112 410.2 321 64.2
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 2.1e-112 409.8 350 61.1
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 2.1e-112 409.8 340 62.1
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 2.1e-112 409.8 367 59.4
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.8e-111 406.8 334 62.6
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.8e-111 406.8 347 60.5
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.5e-110 403.7 357 60.2
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 4.3e-110 402.1 348 60.9
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 5.7e-110 401.7 339 59.9
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.3e-109 400.6 316 63.6
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 1.7e-109 400.2 355 59.2
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.7e-109 400.2 337 60.8
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 3.7e-109 399.1 367 57.8
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 3.7e-109 399.1 337 60.8
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 1.8e-108 396.7 375 57.3
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.8e-108 396.7 337 60.5
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 2.4e-108 396.4 333 59.8
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.4e-108 396.4 354 57.6
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 5.3e-108 395.2 337 60.2
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 6.9e-108 394.8 339 58.7
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 9.1e-108 394.4 370 57.6
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.5e-107 393.7 354 56.8
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 2.0e-107 393.3 367 56.9
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 5.9e-107 391.7 333 60.7
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.2e-106 389.8 369 56.1
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 3.8e-106 389.0 337 59.3
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 5.0e-106 388.7 353 58.1
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 8.5e-106 387.9 363 56.5
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.1e-105 387.5 353 58.4
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.4e-105 387.1 327 59.0
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 1.6e-104 383.6 331 58.9
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.7e-104 382.9 363 56.2
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 1.4e-103 380.6 324 60.8
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.8e-103 380.2 350 57.4
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 3.0e-103 379.4 317 60.9
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 6.7e-103 378.3 350 57.4
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 6.7e-103 378.3 334 57.5
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 8.8e-103 377.9 318 60.4
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 2.0e-102 376.7 327 59.9
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 4.4e-102 375.6 363 55.4
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 7.4e-102 374.8 328 57.9
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 9.7e-102 374.4 317 59.6
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 9.7e-102 374.4 363 55.4
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 1.3e-101 374.0 363 55.6
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 2.2e-101 373.2 338 58.0
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 2.2e-101 373.2 358 56.7
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 2.8e-101 372.9 322 58.4
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.1e-100 370.9 355 54.9
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.8e-100 370.2 329 59.0
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 3.1e-100 369.4 326 58.9
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 3.1e-100 369.4 329 59.0
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 7.0e-100 368.2 345 56.8
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 9.1e-100 367.9 326 58.0
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.2e-99 367.5 366 52.7
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 3.5e-99 365.9 324 59.6
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 7.7e-99 364.8 332 55.7
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.3e-98 364.0 331 57.7
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.7e-98 363.6 334 56.6
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.2e-98 363.2 291 64.9
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 3.8e-98 362.5 362 52.8
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 3.8e-98 362.5 364 54.7
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 5.0e-98 362.1 330 56.4
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.5e-97 360.5 357 53.5
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.5e-97 360.5 320 58.1
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.9e-97 360.1 340 54.7
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 5.5e-97 358.6 333 56.2
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.5e-97 358.6 357 55.2
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 1.6e-96 357.1 354 52.8
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.7e-96 356.3 362 52.5
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 8.0e-96 354.8 330 55.8
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 8.0e-96 354.8 366 53.8
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 3.0e-95 352.8 285 61.1
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 4.0e-95 352.4 316 56.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 6.7e-95 351.7 341 54.0
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 6.7e-95 351.7 366 52.2
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 8.8e-95 351.3 288 62.2
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 2.0e-94 350.1 364 52.2
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 4.4e-94 349.0 330 55.5
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.7e-94 348.6 288 61.8
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 9.7e-94 347.8 358 55.3
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 4.8e-93 345.5 306 57.8
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 8.2e-93 344.7 323 56.7
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 8.2e-93 344.7 316 55.7
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 2.4e-92 343.2 371 51.2
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.1e-92 342.4 317 57.4
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 5.3e-92 342.0 359 51.0
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.2e-91 340.9 353 52.1
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.2e-91 340.9 316 54.7
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.6e-91 340.5 345 52.2
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.3e-90 337.4 358 52.5
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 5.5e-89 332.0 312 52.6
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 6.1e-88 328.6 303 55.8
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.0e-87 327.8 285 56.1
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 1.4e-87 327.4 294 57.5
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-80 304.3 317 53.0
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 7.5e-78 295.0 340 47.1
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 1.4e-76 290.8 272 55.1
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.6e-75 287.3 336 46.1
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 2.3e-74 283.5 332 49.1
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 5.0e-74 282.3 287 50.2
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.2e-72 277.7 283 49.8
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 7.3e-65 251.9 189 65.6
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 6.2e-64 248.8 262 51.5
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.6e-62 243.4 289 46.0
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 9.2e-60 235.0 280 43.9
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 2.5e-57 226.9 272 46.0
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 3.3e-57 226.5 269 44.2
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.1e-55 221.5 280 41.1
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.6e-54 216.9 269 44.2
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 3.2e-52 209.9 221 51.1
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 4.6e-51 206.1 302 39.7
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.4e-44 184.5 164 57.9
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.2e-38 164.9 179 51.4
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.1e-33 148.3 141 55.3
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 1.1e-33 148.3 132 57.6
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 5.3e-23 112.8 86 62.8
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 6.0e-19 99.4 86 59.3
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.8e-18 97.8 175 38.3
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 2.3e-18 97.4 109 49.5
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 6.2e-16 89.4 133 43.6
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 6.2e-16 89.4 133 43.6
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 1.3e-13 81.6 66 60.6
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 1.7e-13 81.3 89 48.3
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.6e-09 65.5 71 47.9
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.6e-08 64.7 97 40.2
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 1.2e-06 58.5 51 56.9


User provided reference genes

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