Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 7.2e-231 803.5 394 100.0
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 2.9e-163 578.9 422 70.6
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 4.4e-156 555.1 410 68.3
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 2.3e-152 542.7 421 66.5
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 1.3e-142 510.4 422 62.6
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 2.2e-70 270.4 406 36.9
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 5.6e-66 255.8 425 36.2
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 1.4e-64 251.1 434 36.9
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 8.9e-64 248.4 410 36.3
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 7.0e-61 238.8 401 36.4
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 2.1e-60 237.3 415 35.4
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 3.9e-59 233.0 408 34.6
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 5.0e-59 232.6 413 36.3
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 8.6e-59 231.9 411 37.2
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 8.6e-59 231.9 444 34.0
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.9e-58 230.7 413 37.8
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.9e-58 230.7 413 37.8
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 2.5e-58 230.3 415 33.3
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 3.3e-58 229.9 391 34.0
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.3e-58 229.6 404 35.6
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 4.3e-58 229.6 405 34.1
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 4.3e-58 229.6 411 36.5
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 5.6e-58 229.2 411 35.3
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 9.5e-58 228.4 409 33.5
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 2.1e-57 227.3 407 35.4
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 3.6e-57 226.5 421 34.9
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 3.6e-57 226.5 403 36.7
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 8.1e-57 225.3 404 35.1
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.1e-56 224.9 407 34.6
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.4e-56 224.6 407 34.4
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 1.8e-56 224.2 412 34.5
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 5.2e-56 222.6 423 32.6
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 6.8e-56 222.2 404 34.7
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 6.8e-56 222.2 407 34.4
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 3.4e-55 219.9 407 36.6
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 7.5e-55 218.8 414 33.8
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 7.5e-55 218.8 422 34.8
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 1.7e-54 217.6 407 34.4
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.7e-54 217.6 404 34.4
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 2.9e-54 216.9 387 35.1
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 6.4e-54 215.7 404 36.1
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 7.1e-53 212.2 408 31.9
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 3.5e-52 209.9 417 32.6
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 4.6e-52 209.5 401 33.7
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 7.8e-52 208.8 412 34.0
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 3.0e-51 206.8 332 34.3
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 1.1e-50 204.9 415 34.7
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 1.9e-50 204.1 407 34.9
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.9e-50 204.1 412 34.0
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.9e-50 204.1 412 34.0
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 1.9e-50 204.1 413 32.2
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.3e-50 203.4 412 33.3
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 1.2e-49 201.4 417 31.9
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 1.6e-49 201.1 325 36.0
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 2.1e-49 200.7 434 32.3
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.1e-49 200.7 398 32.2
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 4.7e-49 199.5 398 33.9
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 1.4e-48 198.0 412 34.5
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 4.0e-48 196.4 419 33.4
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 5.2e-48 196.1 382 33.2
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.9e-47 191.8 411 31.9
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 4.9e-46 189.5 429 31.2
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 6.4e-46 189.1 410 30.7
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.9e-45 187.6 411 30.4
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 3.2e-45 186.8 417 31.4
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 7.1e-45 185.7 405 29.6
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 7.1e-45 185.7 568 28.0
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 4.6e-44 183.0 424 30.0
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 6.0e-44 182.6 365 31.2
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 1.0e-43 181.8 385 30.4
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 3.0e-43 180.3 402 31.8
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 5.1e-43 179.5 444 28.6
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 6.6e-43 179.1 402 31.6
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.1e-42 178.3 406 29.6
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.1e-42 178.3 432 31.0
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 1.5e-42 177.9 429 29.1
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 7.3e-42 175.6 403 31.5
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 7.3e-42 175.6 430 30.0
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.6e-42 175.3 466 28.1
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.7e-41 172.9 368 32.1
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.4e-40 171.4 495 27.9
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 2.4e-40 170.6 232 42.2
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 2.4e-40 170.6 420 30.5
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 3.1e-40 170.2 408 29.4
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 6.9e-40 169.1 332 33.7
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 9.0e-40 168.7 429 28.0
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.0e-39 167.5 429 28.4
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.4e-39 166.8 355 31.3
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.9e-38 163.7 380 30.8
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.4e-37 160.6 391 29.9
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 4.2e-37 159.8 422 27.7
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 6.0e-36 156.0 422 27.0
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 1.0e-35 155.2 399 31.6
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 8.7e-35 152.1 418 28.2
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 1.5e-34 151.4 391 29.2
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.6e-34 149.4 402 28.6
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 7.3e-34 149.1 282 33.3
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.3e-33 148.3 328 30.8
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.8e-33 147.1 343 29.4
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 1.4e-32 144.8 381 28.9
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 3.1e-32 143.7 348 28.7
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 2.6e-31 140.6 404 27.7
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.9e-31 138.7 168 41.7
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.2e-30 137.5 168 41.1
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 2.9e-30 137.1 345 29.3
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 4.9e-30 136.3 410 25.9
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 6.4e-30 136.0 168 41.1
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.4e-30 136.0 168 41.1
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 5.4e-29 132.9 188 37.8
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 9.3e-29 132.1 155 41.9
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 9.3e-29 132.1 155 43.2
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.3e-27 128.3 323 29.7
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 3.9e-27 126.7 393 24.7
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 4.3e-26 123.2 186 35.5
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 9.6e-26 122.1 353 27.8
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 9.6e-26 122.1 168 38.7
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 2.4e-24 117.5 197 35.5
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 3.1e-24 117.1 168 37.5
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 4.0e-24 116.7 160 40.6
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 3.4e-23 113.6 158 40.5
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 1.3e-22 111.7 174 37.9
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.4e-22 109.4 336 28.6
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 1.3e-19 101.7 163 36.8
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 2.3e-19 100.9 167 35.3
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 4.3e-18 96.7 176 34.1
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 1.6e-17 94.7 175 32.0
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 1.6e-17 94.7 97 49.5
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 2.8e-17 94.0 96 52.1
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 4.8e-17 93.2 163 35.0
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 6.2e-17 92.8 176 33.5
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 3.1e-16 90.5 216 28.2
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 5.3e-16 89.7 170 31.2
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 5.3e-16 89.7 90 43.3
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 1.2e-15 88.6 162 32.7
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 3.4e-15 87.0 162 32.1
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.4e-15 87.0 98 42.9
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 5.8e-15 86.3 162 32.1
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 7.6e-15 85.9 162 31.5
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.0e-14 85.5 167 32.9
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 2.2e-14 84.3 170 30.0
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 2.2e-14 84.3 166 32.5
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 2.9e-14 84.0 93 40.9
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 2.9e-14 84.0 93 40.9
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 4.9e-14 83.2 113 39.8
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 4.9e-14 83.2 139 33.1
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 1.1e-13 82.0 170 30.0
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 3.2e-13 80.5 97 40.2
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.2e-13 80.1 117 40.2
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 4.2e-13 80.1 97 40.2
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.7e-12 77.4 98 39.8
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 1.0e-11 75.5 98 43.9
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 1.3e-11 75.1 170 30.6
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 2.5e-10 70.9 109 39.4
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 4.3e-10 70.1 283 25.8
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 5.7e-10 69.7 73 43.8
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 7.4e-10 69.3 155 30.3
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 9.7e-10 68.9 92 38.0
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 1.6e-09 68.2 99 36.4
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 3.7e-09 67.0 308 24.4
Dinv26594 Davidia involucrata HOM05D000074 ORTHO05D001293 6.3e-09 66.2 80 43.8
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 6.3e-09 66.2 167 28.1
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 8.2e-09 65.9 99 36.4
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 8.2e-09 65.9 99 36.4
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 8.2e-09 65.9 99 36.4
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-08 65.1 100 39.0
EL10Ac6g15056 Beta vulgaris HOM05D003575 ORTHO05D003587 3.1e-08 63.9 72 40.3
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 5.3e-08 63.2 191 26.2
EL10Ac9g22882 Beta vulgaris HOM05D003575 ORTHO05D003587 1.5e-07 61.6 72 38.9
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 1.5e-07 61.6 99 35.4
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 2.6e-07 60.8 100 36.0
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 7.7e-07 59.3 97 38.1


User provided reference genes

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