Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014361 Sechium edule HOM05D002951 ORTHO05D003257 9.3e-43 176.4 85 100.0
ClCG08G008650 Citrullus lanatus HOM05D002951 ORTHO05D003257 1.9e-32 142.1 79 87.3
Sed0027653 Sechium edule HOM05D002951 ORTHO05D003257 3.3e-32 141.4 79 87.3
MELO3C019934.2 Cucumis melo HOM05D002951 ORTHO05D003257 3.1e-30 134.8 79 84.8
TAR628G1408 Trochodendron aralioides HOM05D002951 ORTHO05D003257 6.0e-18 94.0 78 64.1
COL.COLO4_36800 Corchorus olitorius HOM05D002951 ORTHO05D003257 2.3e-17 92.0 48 83.3
Sabra13G0098700 Salix brachista HOM05D002951 ORTHO05D003257 3.9e-17 91.3 75 64.0
Potri.013G116600 Populus trichocarpa HOM05D002951 ORTHO05D003257 1.1e-16 89.7 64 68.8
Sopen04g028680 Solanum pennellii HOM05D002951 ORTHO05D003257 1.1e-16 89.7 72 61.1
Duzib116G0078 Durio zibethinus HOM05D002951 ORTHO05D003257 1.9e-16 89.0 47 83.0
PGSC0003DMG400027541 Solanum tuberosum HOM05D002951 ORTHO05D003257 1.9e-16 89.0 82 53.7
Gohir.D05G274300 Gossypium hirsutum HOM05D002951 ORTHO05D003257 2.5e-16 88.6 43 90.7
Gorai.009G287400 Gossypium raimondii HOM05D002951 ORTHO05D003257 2.5e-16 88.6 43 90.7
Nitab4.5_0001307g0190 Nicotiana tabacum HOM05D002951 ORTHO05D003257 2.5e-16 88.6 52 75.0
Peaxi162Scf00756g10018 Petunia axillaris HOM05D002951 ORTHO05D003257 2.5e-16 88.6 48 79.2
Thecc.08G198800 Theobroma cacao HOM05D002951 ORTHO05D003257 2.5e-16 88.6 75 58.7
Gohir.A05G272100 Gossypium hirsutum HOM05D002951 ORTHO05D003257 5.7e-16 87.4 39 94.9
Nitab4.5_0000553g0050 Nicotiana tabacum HOM05D002951 ORTHO05D003257 5.7e-16 87.4 54 72.2
Solyc04g072490.4 Solanum lycopersicum HOM05D002951 ORTHO05D003257 5.7e-16 87.4 50 76.0
Manes.18G097700 Manihot esculenta HOM05D002951 ORTHO05D003257 7.4e-16 87.0 47 78.7
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 9.7e-16 86.7 65 72.3
CAN.G617.1 Capsicum annuum HOM05D002951 ORTHO05D003257 9.7e-16 86.7 81 50.6
CiPaw.16G005700 Carya illinoinensis HOM05D002951 ORTHO05D003257 9.7e-16 86.7 75 62.7
Glyma.15G258600 Glycine max HOM05D002951 ORTHO05D003257 9.7e-16 86.7 51 76.5
Ciclev10003691m.g Citrus clementina HOM05D002951 ORTHO05D003257 1.3e-15 86.3 73 57.5
Lj3g0021385 Lotus japonicus HOM05D002951 ORTHO05D003257 1.3e-15 86.3 51 74.5
MBI05_g36577_MAGBIO Magnolia biondii HOM05D002951 ORTHO05D003257 2.2e-15 85.5 66 62.1
Phvul.005G060200 Phaseolus vulgaris HOM05D002951 ORTHO05D003257 2.2e-15 85.5 51 74.5
Prupe.8G050100 Prunus persica HOM05D002951 ORTHO05D003257 2.8e-15 85.1 47 78.7
Rhsim07G0198700 Rhododendron simsii HOM05D002951 ORTHO05D003257 2.8e-15 85.1 64 64.1
arahy.Tifrunner.gnm1.ann1.WUJ08V Arachis hypogaea HOM05D002951 ORTHO05D003257 3.7e-15 84.7 54 72.2
arahy.Tifrunner.gnm1.ann1.Z2HVA4 Arachis hypogaea HOM05D002951 ORTHO05D003257 3.7e-15 84.7 54 72.2
Cpa.g.sc934.1 Carica papaya HOM05D002951 ORTHO05D003257 3.7e-15 84.7 50 78.0
GSVIVG01001590001 Vitis vinifera HOM05D002951 ORTHO05D003257 3.7e-15 84.7 65 66.2
Glyma.08G168400 Glycine max HOM05D002951 ORTHO05D003257 4.8e-15 84.3 46 78.3
Lsat_1_v5_gn_6_101960 Lactuca sativa HOM05D002951 ORTHO05D003257 1.1e-14 83.2 78 46.2
QL02p034820 Quercus lobata HOM05D002951 ORTHO05D003257 1.4e-14 82.8 47 83.0
CANSAT25G3160 Cannabis sativa HOM05D002951 ORTHO05D003257 4.1e-14 81.3 57 73.7
Gorai.005G076100 Gossypium raimondii HOM05D002951 ORTHO05D003257 4.1e-14 81.3 66 59.1
Lalb_Chr01g0015861 Lupinus albus HOM05D002951 ORTHO05D003257 4.1e-14 81.3 48 72.9
Gohir.D02G067200 Gossypium hirsutum HOM05D002951 ORTHO05D003257 5.3e-14 80.9 66 59.1
Hma1.2p1_0276F.1_g111330 Hydrangea macrophylla HOM05D002951 ORTHO05D003257 5.3e-14 80.9 39 92.3
Aqoxy6G00503 Aquilegia oxysepala HOM05D002951 ORTHO05D003257 6.9e-14 80.5 68 60.3
Solyc10g011830.1 Solanum lycopersicum HOM05D002951 ORTHO05D003257 6.9e-14 80.5 38 89.5
HanXRQChr10g0278541 Helianthus annuus HOM05D002951 ORTHO05D003257 9.0e-14 80.1 77 48.1
Carub.0001s3239 Capsella rubella HOM05D002951 ORTHO05D003257 1.5e-13 79.3 38 86.8
Carub.0033s0010 Capsella rubella HOM05D002951 ORTHO05D003257 1.5e-13 79.3 38 86.8
Cfa018222 Carpinus fangiana HOM05D002951 ORTHO05D003257 1.5e-13 79.3 39 89.7
Haze_17880 Corylus avellana HOM05D002951 ORTHO05D003257 1.5e-13 79.3 39 89.7
MD00G1078200 Malus domestica HOM05D002951 ORTHO05D003257 1.5e-13 79.3 62 59.7
Gohir.A02G061600 Gossypium hirsutum HOM05D002951 ORTHO05D003257 2.0e-13 79.0 43 79.1
Lsat_1_v5_gn_9_43080 Lactuca sativa HOM05D002951 ORTHO05D003257 2.0e-13 79.0 51 64.7
CSS0025919 Camellia sinensis var. sinensis HOM05D002951 ORTHO05D003257 2.6e-13 78.6 46 80.4
Thhalv10009525m.g Eutrema salsugineum HOM05D002951 ORTHO05D003257 3.4e-13 78.2 61 60.7
TPR.G33811 Trifolium pratense HOM05D002951 ORTHO05D003257 3.4e-13 78.2 54 68.5
VMungo1127G1074 Vigna mungo HOM05D002951 ORTHO05D003257 4.5e-13 77.8 54 68.5
Phvul.011G174100 Phaseolus vulgaris HOM05D002951 ORTHO05D003257 7.7e-13 77.0 48 68.8
C06p11730 Brassica napus HOM05D002951 ORTHO05D003257 1.0e-12 76.6 62 59.7
Sp1g29480 Schrenkiella parvula HOM05D002951 ORTHO05D003257 1.0e-12 76.6 43 79.1
TWI34G1361 Tripterygium wilfordii HOM05D002951 ORTHO05D003257 1.0e-12 76.6 61 60.7
CARHR033740 Cardamine hirsuta HOM05D002951 ORTHO05D003257 1.3e-12 76.3 38 84.2
Lalb_Chr01g0007131 Lupinus albus HOM05D002951 ORTHO05D003257 1.3e-12 76.3 47 68.1
AL1G48770 Arabidopsis lyrata HOM05D002951 ORTHO05D003257 1.7e-12 75.9 58 62.1
A09p32220 Brassica napus HOM05D002951 ORTHO05D003257 1.7e-12 75.9 62 58.1
THA.LOC104813094 Tarenaya hassleriana HOM05D002951 ORTHO05D003257 1.7e-12 75.9 59 66.1
AT1G34245 Arabidopsis thaliana HOM05D002951 ORTHO05D003257 2.2e-12 75.5 61 59.0
Ca_03621_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.2e-12 75.5 52 69.2
Lj3g0019899 Lotus japonicus HOM05D002951 ORTHO05D003257 2.2e-12 75.5 50 64.0
BcaB07g32489 Brassica carinata HOM05D002951 ORTHO05D003257 2.9e-12 75.1 62 58.1
BcaB07g33145 Brassica carinata HOM05D002951 ORTHO05D003257 2.9e-12 75.1 62 58.1
BraA09t38768Z Brassica rapa HOM05D002951 ORTHO05D003257 2.9e-12 75.1 62 58.1
DCAR_012849 Daucus carota HOM05D002951 ORTHO05D003257 2.9e-12 75.1 63 58.7
HanXRQChr11g0320401 Helianthus annuus HOM05D002951 ORTHO05D003257 5.0e-12 74.3 43 69.8
Lalb_Chr25g0284831 Lupinus albus HOM05D002951 ORTHO05D003257 6.5e-12 73.9 38 78.9
PSO541G3005 Papaver somniferum HOM05D002951 ORTHO05D003257 6.5e-12 73.9 44 75.0
PGR042G1750 Punica granatum HOM05D002951 ORTHO05D003257 8.5e-12 73.6 53 64.2
ATR0564G525 Amborella trichopoda HOM05D002951 ORTHO05D003257 1.1e-11 73.2 62 58.1
CSS0011693 Camellia sinensis var. sinensis HOM05D002951 ORTHO05D003257 1.1e-11 73.2 44 77.3
Medtr2g067510 Medicago truncatula HOM05D002951 ORTHO05D003257 1.4e-11 72.8 80 51.2
Psat1g013360 Pisum sativum HOM05D002951 ORTHO05D003257 1.4e-11 72.8 52 65.4
HPP92_016807 Vanilla planifolia HOM05D002951 ORTHO05D003257 4.2e-11 71.2 34 88.2
HPP92_016817 Vanilla planifolia HOM05D002951 ORTHO05D003257 4.2e-11 71.2 34 88.2
Migut.N02915 Erythranthe guttata HOM05D002951 ORTHO05D003257 9.4e-11 70.1 40 82.5
CiPaw.15G006900 Carya illinoinensis HOM05D002951 ORTHO05D003257 1.6e-10 69.3 50 68.0
ECA232G4651 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-10 69.3 44 65.9
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.6e-10 69.3 42 83.3
RcHm_v2.0_Chr6g0272891 Rosa chinensis HOM05D002951 ORTHO05D003257 1.6e-10 69.3 68 60.3
SalBow6G0519 Salvia bowleyana HOM05D002951 ORTHO05D003257 1.6e-10 69.3 39 76.9
MSTRG.22134 Avicennia marina HOM05D002951 ORTHO05D003257 2.1e-10 68.9 40 82.5
EL10Ac1g01703 Beta vulgaris HOM05D002951 ORTHO05D003257 2.1e-10 68.9 43 74.4
BcaC08g43793 Brassica carinata HOM05D002951 ORTHO05D003257 2.1e-10 68.9 62 56.5
BolC6t36304H Brassica oleracea HOM05D002951 ORTHO05D003257 2.1e-10 68.9 64 54.7
Os04g0637300 Oryza sativa ssp. japonica HOM05D002951 ORTHO05D003257 6.1e-10 67.4 33 84.8
FAN24G0163 Fragaria x ananassa HOM05D002951 ORTHO05D003257 7.9e-10 67.0 83 50.6
FvH4_2g12460 Fragaria vesca HOM05D002951 ORTHO05D003257 1.0e-09 66.6 83 50.6
FAN27G0015 Fragaria x ananassa HOM05D002951 ORTHO05D003257 1.0e-09 66.6 83 50.6
PSO675G4549 Papaver somniferum HOM05D002951 ORTHO05D003257 1.8e-09 65.9 83 49.4
SalBow7G0681 Salvia bowleyana HOM05D002951 ORTHO05D003257 5.1e-09 64.3 38 71.1
Os04g0457700 Oryza sativa ssp. japonica HOM05D002951 ORTHO05D003257 6.7e-09 63.9 52 53.8
SGA_v2.0_scaffold315G48378 Striga asiatica HOM05D002951 ORTHO05D003257 6.7e-09 63.9 71 54.9
SEGI_13003 Sequoiadendron giganteum HOM05D002951 ORTHO05D003257 8.8e-09 63.5 32 75.0
Zm00001eb069150 Zea mays HOM05D002951 ORTHO05D003257 1.1e-08 63.2 31 87.1
Zm00001eb431780 Zea mays HOM05D002951 ORTHO05D003257 1.1e-08 63.2 31 87.1
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.9e-08 62.4 76 47.4
Aa31LG4G8780 Aethionema arabicum HOM05D002951 ORTHO05D003257 2.5e-08 62.0 32 75.0
CARHR290900 Cardamine hirsuta HOM05D002951 ORTHO05D003257 5.7e-08 60.8 33 72.7
Zm00001eb423950 Zea mays HOM05D002951 ORTHO05D003257 1.7e-07 59.3 35 68.6
BcaC08g46616 Brassica carinata HOM05D002951 ORTHO05D003257 2.8e-07 58.5 33 66.7
Thhalv10019790m.g Eutrema salsugineum HOM05D002951 ORTHO05D003257 2.8e-07 58.5 33 69.7
AL2G31460 Arabidopsis lyrata HOM05D002951 ORTHO05D003257 4.8e-07 57.8 42 54.8
BolC2t08962H Brassica oleracea HOM05D002951 ORTHO05D003257 4.8e-07 57.8 32 71.9
AagrBONN_evm.TU.Sc2ySwM_344.5687 Anthoceros agrestis HOM05D002951 ORTHO05D003257 6.3e-07 57.4 32 71.9
BcaB05g24684 Brassica carinata HOM05D002951 ORTHO05D003257 8.2e-07 57.0 32 71.9
A02p17470 Brassica napus HOM05D002951 ORTHO05D003257 1.4e-06 56.2 32 71.9
BraA02t06792Z Brassica rapa HOM05D002951 ORTHO05D003257 1.4e-06 56.2 32 71.9
AT1G71866 Arabidopsis thaliana HOM05D002951 ORTHO05D003257 2.4e-06 55.5 33 63.6
Carub.0002s1864 Capsella rubella HOM05D002951 ORTHO05D003257 2.4e-06 55.5 42 52.4
ATR0693G220 Amborella trichopoda HOM05D002951 ORTHO05D003257 3.1e-06 55.1 89 39.3
FvH4_6g45090 Fragaria vesca HOM05D002951 ORTHO05D003257 3.1e-06 55.1 35 71.4
MD17G1079000 Malus domestica HOM05D002951 ORTHO05D003257 3.1e-06 55.1 32 81.2
Rhsim04G0019300 Rhododendron simsii HOM05D002951 ORTHO05D003257 3.1e-06 55.1 35 68.6
TWI75G1165 Tripterygium wilfordii HOM05D002951 ORTHO05D003257 3.1e-06 55.1 50 54.0
vmacro09546 Vaccinium macrocarpon HOM05D002951 ORTHO05D003257 3.1e-06 55.1 35 68.6
A07p38000 Brassica napus HOM05D002951 ORTHO05D003257 5.3e-06 54.3 41 53.7
C06p45920 Brassica napus HOM05D002951 ORTHO05D003257 5.3e-06 54.3 41 53.7
BolC6t39644H Brassica oleracea HOM05D002951 ORTHO05D003257 5.3e-06 54.3 41 53.7
Hma1.2p1_0875F.1_g231370 Hydrangea macrophylla HOM05D002951 ORTHO05D003257 5.3e-06 54.3 35 71.4
HPP92_008822 Vanilla planifolia HOM05D002951 ORTHO05D003257 5.3e-06 54.3 33 75.8
CAN.G248.45 Capsicum annuum HOM05D002951 ORTHO05D003257 6.9e-06 53.9 35 71.4
FAN02G4121 Fragaria x ananassa HOM05D000976 ORTHO05D003257 6.9e-06 53.9 35 68.6
FAN05G2227 Fragaria x ananassa HOM05D000976 ORTHO05D000847 6.9e-06 53.9 35 68.6
FAN09G0176 Fragaria x ananassa HOM05D002951 ORTHO05D003257 6.9e-06 53.9 35 68.6
TWI36G1582 Tripterygium wilfordii HOM05D002951 ORTHO05D003257 6.9e-06 53.9 32 75.0
Ah.09g225130 Amaranthus hybridus HOM05D002951 ORTHO05D003257 9.1e-06 53.5 51 54.9
COL.COLO4_21238 Corchorus olitorius HOM05D002951 ORTHO05D003257 9.1e-06 53.5 56 53.6
Nn1g06655 Nelumbo nucifera HOM05D002951 ORTHO05D003257 9.1e-06 53.5 35 68.6
Prupe.3G235800 Prunus persica HOM05D002951 ORTHO05D003257 9.1e-06 53.5 32 75.0
SGA_v2.0_scaffold109G31104 Striga asiatica HOM05D002951 ORTHO05D003257 9.1e-06 53.5 48 56.2


User provided reference genes

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