Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 2.5e-254 881.7 467 100.0
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 4.3e-174 615.1 523 68.1
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.2e-173 613.6 498 69.3
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 8.1e-173 610.9 498 69.1
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 1.2e-171 607.1 498 68.7
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 7.1e-145 518.1 453 67.5
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 6.7e-143 511.5 453 64.7
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 3.3e-142 509.2 503 58.8
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 1.6e-141 506.9 459 63.0
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 6.9e-140 501.5 451 61.4
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 6.9e-140 501.5 454 62.1
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.0e-139 500.0 451 61.2
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 1.0e-138 497.7 454 64.1
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 1.9e-137 493.4 453 61.8
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 4.2e-137 492.3 458 65.1
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 5.5e-137 491.9 461 59.7
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 9.3e-137 491.1 459 62.7
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 1.6e-136 490.3 451 64.1
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 1.6e-136 490.3 449 64.8
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 2.7e-136 489.6 453 64.7
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 4.6e-136 488.8 453 64.7
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 6.1e-136 488.4 466 59.7
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 7.9e-136 488.0 451 62.3
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 7.9e-136 488.0 453 60.7
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.3e-135 486.5 459 61.0
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 3.0e-135 486.1 453 61.8
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 3.0e-135 486.1 454 61.9
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 6.7e-135 485.0 459 61.0
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 3.3e-134 482.6 511 56.4
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 1.4e-132 477.2 444 64.6
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 6.9e-132 474.9 448 62.1
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 7.7e-131 471.5 454 62.8
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 1.3e-130 470.7 499 56.3
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 2.2e-130 469.9 459 58.2
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 2.2e-130 469.9 448 62.5
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 5.0e-130 468.8 451 58.5
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 8.5e-130 468.0 459 57.5
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 8.5e-130 468.0 459 57.5
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 8.5e-130 468.0 457 61.3
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 4.2e-129 465.7 451 58.3
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 4.2e-129 465.7 445 61.8
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 4.2e-129 465.7 445 62.2
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 7.2e-129 464.9 453 62.5
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 1.2e-128 464.2 454 62.1
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 4.6e-128 462.2 479 58.7
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 6.1e-128 461.8 456 61.8
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 3.0e-127 459.5 447 60.9
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.0e-127 459.5 441 60.8
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 1.1e-126 457.6 448 57.6
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 1.5e-126 457.2 526 55.7
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 1.5e-126 457.2 526 55.7
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.5e-126 457.2 444 63.5
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.5e-126 456.4 497 57.9
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 2.5e-126 456.4 443 60.3
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 9.7e-126 454.5 449 58.4
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.7e-125 452.6 434 60.8
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 4.8e-125 452.2 459 60.1
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 6.3e-125 451.8 443 60.7
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 6.3e-125 451.8 443 60.7
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 6.3e-125 451.8 503 52.9
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.1e-124 449.5 454 60.4
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 3.1e-124 449.5 453 58.7
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 4.1e-124 449.1 449 59.7
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.0e-123 446.8 440 62.5
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 2.6e-123 446.4 453 58.9
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 2.6e-123 446.4 436 57.6
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.4e-123 446.0 454 60.4
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.0e-122 444.5 508 55.9
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.7e-122 443.7 454 59.7
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 5.0e-122 442.2 447 57.0
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 8.5e-122 441.4 507 55.0
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 1.1e-121 441.0 506 55.1
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.4e-121 440.7 454 59.5
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.9e-121 440.3 450 62.4
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 1.2e-120 437.6 441 59.0
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 2.1e-120 436.8 482 56.2
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 3.6e-120 436.0 500 55.0
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 7.9e-120 434.9 446 56.7
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 1.8e-119 433.7 442 59.0
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 6.7e-119 431.8 444 59.9
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 2.6e-118 429.9 446 59.9
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 5.7e-118 428.7 446 55.8
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 8.2e-117 424.9 451 56.3
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 1.4e-116 424.1 449 56.6
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 7.0e-116 421.8 457 57.1
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 9.1e-116 421.4 452 58.0
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 2.0e-115 420.2 480 52.3
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 2.6e-115 419.9 451 58.1
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 5.9e-115 418.7 456 55.5
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.3e-114 417.5 450 56.9
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 3.8e-114 416.0 450 54.0
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.1e-113 414.5 456 55.5
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.6e-112 410.6 447 57.9
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.4e-111 407.5 454 57.5
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 2.3e-111 406.8 430 55.1
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 3.0e-111 406.4 449 57.7
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 2.0e-110 403.7 445 56.6
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 2.6e-110 403.3 440 54.1
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.1e-108 396.4 455 58.9
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 4.1e-108 396.0 507 52.5
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 2.0e-107 393.7 431 54.3
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 2.2e-106 390.2 450 56.4
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 6.5e-106 388.7 458 51.5
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.9e-105 387.1 460 52.2
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.5e-105 386.7 441 51.9
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 7.2e-105 385.2 456 48.9
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.2e-104 384.4 455 57.6
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-104 384.4 433 57.0
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 1.6e-104 384.0 433 52.7
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 2.7e-104 383.3 433 55.4
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 4.7e-104 382.5 433 53.8
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 6.1e-104 382.1 444 52.3
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.0e-103 381.3 450 51.8
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.8e-103 380.6 435 53.3
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 2.3e-103 380.2 444 52.0
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 5.2e-103 379.0 441 52.8
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 6.8e-103 378.6 442 52.0
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 8.8e-103 378.3 437 57.2
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 3.4e-102 376.3 387 57.4
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 3.4e-102 376.3 387 57.4
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.7e-101 374.0 421 55.8
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 2.8e-101 373.2 437 56.5
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 8.3e-101 371.7 437 56.1
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 1.1e-100 371.3 427 57.6
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 5.4e-100 369.0 458 49.3
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 7.0e-100 368.6 443 55.5
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.5e-99 366.3 442 51.1
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.7e-98 364.0 420 50.0
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 8.5e-98 361.7 432 52.1
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 4.2e-97 359.4 438 48.6
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 4.2e-97 359.4 444 53.8
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 6.1e-96 355.5 436 50.7
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 3.0e-95 353.2 449 53.7
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 1.3e-93 347.8 438 54.6
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.3e-93 345.5 404 52.2
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.6e-91 340.9 448 53.8
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 1.3e-90 337.8 439 50.3
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 1.3e-90 337.8 439 50.3
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 2.3e-90 337.0 448 53.6
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 1.2e-88 331.3 418 53.6
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 3.6e-88 329.7 412 54.1
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.3e-82 311.2 415 52.0
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 5.6e-81 305.8 453 47.0
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 9.5e-81 305.1 441 45.6
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.1e-79 300.1 501 43.1
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.1e-76 291.6 435 46.9
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 3.2e-76 290.0 399 51.4
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 1.8e-71 274.2 469 43.9
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 4.9e-69 266.2 393 48.6
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.9e-68 264.2 333 50.8
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 2.1e-67 260.8 449 41.6
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.0e-66 258.5 334 46.4
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.4e-63 248.1 457 39.2
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.4e-63 248.1 457 39.2
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 1.8e-63 247.7 439 44.2
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.2e-63 246.1 245 52.7
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 3.4e-62 243.4 439 43.7
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 7.6e-62 242.3 389 45.5
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 9.9e-62 241.9 276 49.3
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 4.1e-60 236.5 349 41.3
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.7e-58 231.1 392 40.3
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 2.4e-55 220.7 389 46.3
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.6e-54 215.7 298 45.3
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.4e-52 211.5 346 39.3
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 1.7e-50 204.5 349 39.0
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.1e-49 201.8 443 35.2
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.3e-45 188.3 335 46.6
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.4e-45 186.0 289 42.2
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 7.1e-44 182.6 97 96.9
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 9.3e-44 182.2 244 47.5
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.6e-43 179.9 251 42.6
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 4.6e-43 179.9 278 49.3
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 2.8e-40 170.6 183 53.6
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.8e-39 167.9 351 40.5
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 1.8e-26 124.8 451 35.9
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 9.6e-25 119.0 59 100.0
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 2.4e-07 61.2 196 36.7
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-06 58.9 192 32.8


User provided reference genes

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