Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 9.3e-175 617.1 386 100.0
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 6.3e-131 471.5 412 77.9
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 5.9e-129 464.9 410 77.8
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 8.0e-126 454.5 411 72.7
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 5.4e-106 388.7 404 61.4
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.6e-102 377.1 396 61.1
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.1e-102 376.7 396 60.6
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 6.2e-102 375.2 396 59.1
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 8.1e-102 374.8 393 53.7
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.6e-100 369.8 401 59.1
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 4.9e-99 365.5 404 62.6
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 8.3e-99 364.8 408 62.0
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 9.2e-98 361.3 406 58.6
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 3.0e-96 356.3 391 59.6
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.1e-95 354.4 407 57.0
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.9e-95 353.6 409 57.5
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.3e-95 352.8 405 57.5
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 3.3e-95 352.8 398 54.8
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.1e-93 347.8 400 55.0
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 2.4e-93 346.7 395 57.7
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.5e-92 344.0 398 58.0
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 2.6e-92 343.2 414 50.2
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.7e-91 340.5 389 54.5
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.2e-91 340.1 400 57.8
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 3.8e-91 339.3 405 55.1
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 3.8e-91 339.3 396 58.1
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.1e-90 337.8 404 48.0
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 4.1e-90 335.9 385 51.4
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.6e-89 334.0 411 54.3
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 3.9e-88 329.3 394 51.3
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.2e-86 324.3 411 56.9
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.2e-86 324.3 392 48.5
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.6e-86 322.8 396 51.5
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 8.1e-86 321.6 405 53.8
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 1.4e-85 320.9 391 58.1
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 3.1e-85 319.7 410 53.2
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 5.2e-85 318.9 402 48.8
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.6e-84 316.6 401 48.9
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 7.6e-84 315.1 388 48.7
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 9.9e-84 314.7 398 54.0
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.3e-83 314.3 404 55.2
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.2e-83 313.5 390 54.1
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 3.8e-83 312.8 400 57.0
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 6.4e-83 312.0 393 55.2
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 3.2e-82 309.7 396 48.5
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 9.3e-82 308.1 427 51.8
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 3.0e-80 303.1 392 57.4
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 3.0e-80 303.1 402 45.5
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 3.9e-80 302.8 403 50.9
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 5.1e-80 302.4 402 55.2
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.1e-79 301.2 390 51.3
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 2.1e-78 297.0 399 55.6
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 3.6e-78 296.2 398 49.0
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 9.0e-77 291.6 433 45.5
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 5.4e-74 282.3 399 49.6
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 4.6e-73 279.3 404 44.1
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 2.5e-71 273.5 401 41.1
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 6.2e-70 268.9 403 44.2
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 2.4e-69 266.9 390 54.6
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 5.8e-68 262.3 389 52.2
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 3.0e-64 250.0 399 46.9
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 1.3e-59 234.6 393 43.3
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.7e-59 234.2 392 50.5
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.7e-59 234.2 392 50.5
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.2e-57 228.0 240 50.4
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 2.3e-56 223.8 391 47.6
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.4e-53 213.8 387 40.8
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 5.5e-50 202.6 321 50.2
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 7.9e-49 198.7 476 41.8
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.4e-48 198.0 319 48.0
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.2e-46 190.7 289 41.9
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.2e-42 176.4 245 44.1
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 7.2e-42 175.6 218 60.1
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.7e-41 173.7 269 42.4
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 3.6e-41 173.3 123 62.6
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 3.6e-41 173.3 284 39.4
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 6.1e-41 172.6 282 39.4
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 7.9e-41 172.2 142 55.6
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.8e-40 171.0 142 55.6
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.9e-40 169.9 284 39.1
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 6.7e-40 169.1 217 47.9
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 6.7e-40 169.1 217 47.9
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.1e-39 168.3 266 38.7
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.1e-39 168.3 273 39.2
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.1e-39 168.3 143 55.2
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.5e-39 167.9 261 40.2
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 2.0e-39 167.5 453 36.4
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.6e-39 167.2 138 53.6
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-39 166.8 140 55.0
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-39 166.8 140 55.0
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 3.3e-39 166.8 125 57.6
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 5.7e-39 166.0 272 38.6
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 5.7e-39 166.0 158 51.3
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 7.4e-39 165.6 260 40.0
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 7.4e-39 165.6 118 62.7
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 7.4e-39 165.6 265 37.7
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 7.4e-39 165.6 260 38.8
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 9.7e-39 165.2 130 58.5
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 9.7e-39 165.2 258 38.0
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 1.3e-38 164.9 131 58.0
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.7e-38 164.5 260 39.6
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.7e-38 164.5 427 36.8
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.7e-38 164.5 152 53.3
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 2.8e-38 163.7 130 56.9
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.7e-38 163.3 258 38.8
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 3.7e-38 163.3 258 38.4
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 3.7e-38 163.3 147 51.7
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 3.7e-38 163.3 121 60.3
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 4.8e-38 162.9 228 42.1
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 6.3e-38 162.5 261 37.9
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 6.3e-38 162.5 258 38.8
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 6.3e-38 162.5 254 39.4
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.3e-38 162.5 120 60.0
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 6.3e-38 162.5 266 38.0
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.3e-38 162.5 261 42.9
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.3e-38 162.5 261 42.9
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 8.2e-38 162.2 154 51.9
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 8.2e-38 162.2 260 39.6
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 8.2e-38 162.2 263 37.6
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.1e-37 161.8 115 61.7
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.1e-37 161.8 261 43.3
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 1.4e-37 161.4 156 51.9
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.4e-37 161.4 125 58.4
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.4e-37 161.4 137 54.0
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.8e-37 161.0 266 37.6
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 1.8e-37 161.0 266 37.6
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.1e-37 160.2 122 58.2
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 3.1e-37 160.2 257 40.1
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.1e-37 160.2 280 37.5
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.1e-37 159.8 272 37.9
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 4.1e-37 159.8 123 58.5
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 7.0e-37 159.1 280 36.8
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.2e-36 158.3 270 37.8
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.5e-36 157.9 122 56.6
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.5e-36 157.9 270 37.0
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 7.7e-36 155.6 267 37.8
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 2.2e-35 154.1 265 38.9
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 2.2e-35 154.1 428 32.7
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 2.2e-35 154.1 284 35.9
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 2.9e-35 153.7 124 54.0
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.5e-34 150.6 261 36.4
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 5.5e-34 149.4 478 27.8
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 2.1e-33 147.5 100 64.0
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 8.0e-33 145.6 408 34.8
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 1.8e-32 144.4 319 46.7
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.3e-32 144.1 311 35.4
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 2.0e-31 141.0 123 52.8
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.7e-30 137.9 112 54.5
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.2e-30 137.5 321 35.8
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 3.7e-30 136.7 102 59.8
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.8e-29 134.4 247 34.8
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.1e-29 133.7 245 37.1
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.2e-28 131.7 247 34.4
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.6e-28 131.3 103 55.3
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.3e-27 128.3 378 35.4
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 5.7e-23 112.8 171 50.3
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 4.5e-20 103.2 308 27.9
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-19 101.7 95 56.8
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 2.1e-17 94.4 251 29.9
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 1.5e-07 61.6 43 72.1
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 5.7e-07 59.7 49 53.1


User provided reference genes

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