Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 7.7e-106 387.1 189 100.0
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 1.2e-90 336.7 208 82.2
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 5.7e-77 291.2 216 71.8
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 2.3e-70 269.2 198 71.2
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 6.8e-70 267.7 199 70.9
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 6.8e-70 267.7 199 70.9
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 2.0e-66 256.1 188 72.3
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 1.6e-63 246.5 145 83.4
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 2.1e-63 246.1 149 81.2
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 1.4e-62 243.4 154 79.2
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.0e-61 239.6 194 66.5
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.0e-57 225.7 128 87.5
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.0e-57 225.7 128 87.5
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.0e-57 225.7 128 87.5
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 8.6e-57 224.2 163 71.2
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 9.9e-53 210.7 144 75.7
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 1.7e-52 209.9 146 74.7
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 2.2e-52 209.5 150 72.7
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 1.6e-50 203.4 179 64.8
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 1.0e-49 200.7 146 71.9
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 1.1e-48 197.2 115 85.2
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 9.5e-48 194.1 98 93.9
Gohir.D02G016950 Gossypium hirsutum HOM05D001966 ORTHO05D007227 8.1e-47 191.0 144 69.4
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 1.2e-45 187.2 111 82.9
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 1.2e-45 187.2 111 82.9
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 1.2e-45 187.2 111 82.9
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 1.2e-45 187.2 111 82.9
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 1.2e-45 187.2 111 82.9
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 1.2e-45 187.2 111 82.9
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 3.4e-45 185.7 103 87.4
Gorai.005G020800 Gossypium raimondii HOM05D001966 ORTHO05D007227 4.4e-45 185.3 144 67.4
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 1.3e-44 183.7 134 70.9
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 1.3e-44 183.7 134 70.9
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 2.9e-44 182.6 152 66.4
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 3.8e-44 182.2 103 85.4
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 4.9e-44 181.8 160 62.5
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 4.9e-44 181.8 160 62.5
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 4.9e-44 181.8 160 62.5
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 4.9e-44 181.8 160 62.5
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 4.9e-44 181.8 160 62.5
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 4.9e-44 181.8 160 62.5
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 6.4e-44 181.4 111 81.1
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 6.4e-44 181.4 98 85.7
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 5.4e-43 178.3 98 87.8
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 5.4e-43 178.3 98 87.8
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 6.0e-42 174.9 98 85.7
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 2.3e-41 172.9 188 55.3
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 3.9e-41 172.2 103 83.5
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 6.6e-41 171.4 139 69.1
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 3.6e-39 165.6 94 87.2
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 3.6e-39 165.6 98 83.7
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 8.1e-39 164.5 87 87.4
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 1.8e-38 163.3 100 80.0
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 9.0e-38 161.0 190 51.6
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 7.6e-37 157.9 94 79.8
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 3.8e-36 155.6 119 72.3
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 4.2e-35 152.1 146 58.2
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.5e-34 149.1 110 69.1
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 1.7e-33 146.7 78 87.2
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 7.3e-32 141.4 183 49.2
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 1.8e-30 136.7 68 94.1
arahy.Tifrunner.gnm1.ann1.WHCD0B Arachis hypogaea HOM05D001966 ORTHO05D007227 3.1e-30 136.0 176 46.0
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 2.6e-29 132.9 68 91.2
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 2.2e-28 129.8 64 95.3
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 1.0e-25 120.9 84 72.6
LjContig00489g0013211 Lotus japonicus HOM05D001966 ORTHO05D007227 1.0e-25 120.9 125 53.6
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 1.3e-25 120.6 68 83.8
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.8e-25 120.2 71 87.3
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 2.5e-24 116.3 55 98.2
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 5.6e-24 115.2 116 53.4
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 7.4e-24 114.8 66 89.4
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 2.1e-23 113.2 58 91.4
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 1.4e-22 110.5 73 75.3
SalBow1G8704 Salvia bowleyana HOM05D001966 ORTHO05D007227 4.0e-22 109.0 72 75.0
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 9.0e-22 107.8 59 86.4
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 1.5e-21 107.1 70 77.1
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 5.8e-21 105.1 57 86.0
Phvul.003G142600 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 9.9e-21 104.4 83 69.9
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 2.9e-20 102.8 50 94.0
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 2.9e-20 102.8 50 94.0
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 2.9e-20 102.8 50 94.0
CAN.G593.3 Capsicum annuum HOM05D001966 ORTHO05D004271 2.9e-20 102.8 77 67.5
CAN.G386.21 Capsicum annuum HOM05D001966 ORTHO05D010055 2.5e-19 99.8 77 64.9
SHI27036 Sapria himalayana HOM05D001966 ORTHO05D010986 2.5e-19 99.8 80 67.5
CAN.G1648.17 Capsicum annuum HOM05D001966 ORTHO05D007227 3.2e-19 99.4 89 58.4
unitig_91.g26520 Utricularia gibba HOM05D001966 ORTHO05D007227 5.5e-19 98.6 66 72.7
Atru.chr9.266 Acer truncatum HOM05D001966 ORTHO05D007227 1.2e-18 97.4 54 85.2
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 1.6e-18 97.1 61 80.3
Gohir.D09G040060 Gossypium hirsutum HOM05D001966 ORTHO05D007227 2.1e-18 96.7 110 50.9
Migut.B00950 Erythranthe guttata HOM05D001966 ORTHO05D007227 4.6e-18 95.5 64 76.6
Phvul.002G203700 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 4.6e-18 95.5 68 73.5
Gohir.D02G151976 Gossypium hirsutum HOM05D001966 ORTHO05D010449 6.0e-18 95.1 116 51.7
CAN.G1441.4 Capsicum annuum HOM05D001966 ORTHO05D007227 7.9e-18 94.7 65 75.4
arahy.Tifrunner.gnm1.ann1.UQV5ZS Arachis hypogaea HOM05D001966 ORTHO05D007227 1.0e-17 94.4 46 97.8
arahy.Tifrunner.gnm1.ann1.Z8IK0I Arachis hypogaea HOM05D001966 ORTHO05D007227 1.0e-17 94.4 46 97.8
Sopen06g012240 Solanum pennellii HOM05D000014 ORTHO05D000016 1.0e-17 94.4 46 97.8
Sed0026700 Sechium edule HOM05D001966 ORTHO05D007227 5.1e-17 92.0 95 56.8
BcaNung01515 Brassica carinata HOM05D001966 ORTHO05D010449 1.1e-16 90.9 45 95.6
arahy.Tifrunner.gnm1.ann1.ZUEQ40 Arachis hypogaea HOM05D000743 ORTHO05D007227 1.5e-16 90.5 60 75.0
HPP92_008300 Vanilla planifolia HOM05D001966 ORTHO05D007227 5.6e-16 88.6 57 77.2
BraSC58t46466Z Brassica rapa HOM05D001966 ORTHO05D007227 9.6e-16 87.8 45 93.3
EL10As15g24131 Beta vulgaris HOM05D001966 ORTHO05D007227 2.1e-15 86.7 52 78.8
FAN13G0121 Fragaria x ananassa HOM05D001966 ORTHO05D007227 2.1e-15 86.7 66 72.7
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 2.1e-15 86.7 75 64.0
arahy.Tifrunner.gnm1.ann1.HASF1T Arachis hypogaea HOM05D001966 ORTHO05D007227 8.2e-15 84.7 46 89.1
BcaC04g22012 Brassica carinata HOM05D001966 ORTHO05D007227 8.2e-15 84.7 46 91.3
MD15G1346300 Malus domestica HOM05D001966 ORTHO05D007227 1.8e-14 83.6 46 91.3
Psat5g118880 Pisum sativum HOM05D001966 ORTHO05D007227 5.3e-14 82.0 52 78.8
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 9.0e-14 81.3 39 94.9
Peaxi162Scf00383g00065 Petunia axillaris HOM05D001966 ORTHO05D007227 1.2e-13 80.9 47 83.0
Hma1.2p1_0544F.1_g175786 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 1.3e-12 77.4 38 92.1
TPR.G6399 Trifolium pratense HOM05D001966 ORTHO05D007227 3.8e-12 75.9 63 63.5
Oeu022559.1 Olea europaea HOM05D001966 ORTHO05D011119 4.9e-12 75.5 45 80.0
arahy.Tifrunner.gnm1.ann1.N1DH3R Arachis hypogaea HOM05D001966 ORTHO05D007227 6.5e-12 75.1 58 67.2
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 8.4e-12 74.7 49 71.4
Atru.chr9.267 Acer truncatum HOM05D001966 ORTHO05D007227 9.3e-11 71.2 41 82.9
arahy.Tifrunner.gnm1.ann1.EF1F4B Arachis hypogaea HOM05D000963 ORTHO05D010073 4.6e-10 68.9 51 72.5
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 7.9e-10 68.2 97 44.3
Oeu041170.1 Olea europaea HOM05D000708 ORTHO05D007227 8.7e-09 64.7 35 80.0
EL10Ac8g19704 Beta vulgaris HOM05D001966 ORTHO05D007227 1.9e-08 63.5 28 96.4
MELO3C027875.2 Cucumis melo HOM05D001966 ORTHO05D007227 7.4e-08 61.6 33 84.8
Gohir.D12G091540 Gossypium hirsutum HOM05D001070 ORTHO05D010233 9.7e-08 61.2 89 47.2
COL.COLO4_00694 Corchorus olitorius HOM05D001966 ORTHO05D007227 1.3e-07 60.8 40 72.5
COL.COLO4_02908 Corchorus olitorius HOM05D001966 ORTHO05D007227 1.3e-07 60.8 40 72.5
Gohir.1Z049782 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.6e-07 60.5 28 96.4
Gohir.A04G039285 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.6e-07 60.5 28 96.4
Gohir.A05G323732 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.6e-07 60.5 28 96.4
Gorai.008G099100 Gossypium raimondii HOM05D001070 ORTHO05D010233 2.2e-07 60.1 89 48.3
MELO3C000925.2 Cucumis melo HOM05D001966 ORTHO05D007227 1.1e-06 57.8 33 81.8
Gohir.A13G086695 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.4e-06 57.4 28 89.3
Nitab4.5_0003065g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.4e-06 56.6 24 95.8
Gorai.007G237800 Gossypium raimondii HOM05D001966 ORTHO05D007227 4.1e-06 55.8 28 89.3
arahy.Tifrunner.gnm1.ann1.XERY24 Arachis hypogaea HOM05D001966 ORTHO05D007227 5.3e-06 55.5 31 77.4
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 9.0e-06 54.7 37 70.3


User provided reference genes

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