Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014161 Sechium edule HOM05D003650 ORTHO05D004213 0.0e+00 1184.9 578 100.0
ClCG10G016580 Citrullus lanatus HOM05D003650 ORTHO05D004213 1.3e-257 892.9 689 69.5
Sed0014274 Sechium edule HOM05D003650 ORTHO05D004213 8.0e-255 883.6 689 68.7
MELO3C009717.2 Cucumis melo HOM05D003650 ORTHO05D004213 1.3e-252 876.3 689 68.4
TWI77G0711 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 2.8e-231 805.4 688 60.8
Prupe.7G061300 Prunus persica HOM05D003650 ORTHO05D004213 1.7e-228 796.2 692 60.3
CANSAT80G0970 Cannabis sativa HOM05D003650 ORTHO05D004213 2.9e-228 795.4 689 60.5
TWI74G1194 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 1.4e-227 793.1 688 60.0
MD12G1073600 Malus domestica HOM05D003650 ORTHO05D004213 7.1e-227 790.8 693 59.5
CiPaw.09G038100 Carya illinoinensis HOM05D003650 ORTHO05D004213 1.3e-225 786.6 690 59.7
CiPaw.10G033200 Carya illinoinensis HOM05D003650 ORTHO05D004213 1.3e-225 786.6 690 59.4
TAR633G1518 Trochodendron aralioides HOM05D003650 ORTHO05D004213 8.6e-225 783.9 691 59.2
MD14G1071900 Malus domestica HOM05D003650 ORTHO05D004213 1.5e-224 783.1 692 59.4
Hma1.2p1_2002F.1_g310720 Hydrangea macrophylla HOM05D003650 ORTHO05D004213 2.5e-224 782.3 690 58.7
Actinidia09330 Actinidia chinensis HOM05D003650 ORTHO05D004213 4.7e-223 778.1 690 60.0
CSS0010444 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 8.1e-223 777.3 690 59.3
vmacro07855 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 8.1e-223 777.3 690 59.4
Duzib093G1511 Durio zibethinus HOM05D003650 ORTHO05D004213 1.1e-222 776.9 690 59.0
Cpa.g.sc92.50 Carica papaya HOM05D003650 ORTHO05D004213 8.9e-222 773.9 690 58.4
EL10Ac3g07088 Beta vulgaris HOM05D003650 ORTHO05D004213 2.0e-221 772.7 689 58.6
Thecc.05G153700 Theobroma cacao HOM05D003650 ORTHO05D004213 2.0e-221 772.7 691 59.0
PGR004G2044 Punica granatum HOM05D003650 ORTHO05D004213 2.6e-221 772.3 690 59.4
QL07p000311 Quercus lobata HOM05D003650 ORTHO05D004213 2.6e-221 772.3 689 58.8
COL.COLO4_28278 Corchorus olitorius HOM05D003650 ORTHO05D004213 3.4e-221 771.9 690 59.0
RcHm_v2.0_Chr3g0482321 Rosa chinensis HOM05D003650 ORTHO05D004213 3.4e-221 771.9 690 58.3
Peaxi162Scf00130g00016 Petunia axillaris HOM05D003650 ORTHO05D004213 7.6e-221 770.8 690 58.3
SalBow6G5443 Salvia bowleyana HOM05D003650 ORTHO05D004213 7.6e-221 770.8 690 58.6
FvH4_6g23790 Fragaria vesca HOM05D003650 ORTHO05D004213 9.9e-221 770.4 690 58.7
FAN14G5543 Fragaria x ananassa HOM05D003650 ORTHO05D004213 9.9e-221 770.4 690 58.7
PGSC0003DMG400027249 Solanum tuberosum HOM05D003650 ORTHO05D004213 1.3e-220 770.0 690 58.3
MSTRG.6431 Avicennia marina HOM05D003650 ORTHO05D004213 3.8e-220 768.5 690 58.6
FAN02G1020 Fragaria x ananassa HOM05D003650 ORTHO05D004213 3.8e-220 768.5 690 58.4
FAN05G4085 Fragaria x ananassa HOM05D003650 ORTHO05D004213 3.8e-220 768.5 690 58.4
Gorai.006G136600 Gossypium raimondii HOM05D003650 ORTHO05D004213 3.8e-220 768.5 690 57.5
Lj5g0024914 Lotus japonicus HOM05D003650 ORTHO05D004213 3.8e-220 768.5 690 58.1
arahy.Tifrunner.gnm1.ann1.YDMB1U Arachis hypogaea HOM05D003650 ORTHO05D004213 4.9e-220 768.1 691 57.9
Eucgr.A02349 Eucalyptus grandis HOM05D003650 ORTHO05D004213 4.9e-220 768.1 689 58.3
Sopen04g007820 Solanum pennellii HOM05D003650 ORTHO05D004213 4.9e-220 768.1 690 57.8
Potri.006G051000 Populus trichocarpa HOM05D003650 ORTHO05D004213 6.4e-220 767.7 688 58.9
Oeu008162.1 Olea europaea HOM05D003650 ORTHO05D004213 8.4e-220 767.3 689 58.6
arahy.Tifrunner.gnm1.ann1.MS35EQ Arachis hypogaea HOM05D003650 ORTHO05D004213 1.1e-219 766.9 691 57.9
Ca_26017_v3 Cicer arietinum L. HOM05D003650 ORTHO05D004213 1.1e-219 766.9 690 57.7
CAN.G676.68 Capsicum annuum HOM05D003650 ORTHO05D004213 1.4e-219 766.5 690 58.3
Glyma.10G097600 Glycine max HOM05D003650 ORTHO05D004213 1.4e-219 766.5 691 58.0
Cc06_g17090 Coffea canephora HOM05D003650 ORTHO05D004213 3.2e-219 765.4 678 59.6
Manes.08G050700 Manihot esculenta HOM05D003650 ORTHO05D004213 3.2e-219 765.4 690 58.4
Potri.016G055700 Populus trichocarpa HOM05D003650 ORTHO05D004213 3.2e-219 765.4 690 58.6
Sabra06G0035700 Salix brachista HOM05D003650 ORTHO05D004213 3.2e-219 765.4 690 58.4
GSVIVG01033278001 Vitis vinifera HOM05D003650 ORTHO05D004213 3.2e-219 765.4 680 59.6
FAN09G0940 Fragaria x ananassa HOM05D003650 ORTHO05D004213 4.1e-219 765.0 690 58.1
Sabra16G0058400 Salix brachista HOM05D003650 ORTHO05D004213 5.4e-219 764.6 690 58.3
Ciclev10004391m.g Citrus clementina HOM05D003650 ORTHO05D004213 7.1e-219 764.2 688 58.6
Manes.09G021900 Manihot esculenta HOM05D003650 ORTHO05D004213 7.1e-219 764.2 690 58.1
Gohir.D09G118400 Gossypium hirsutum HOM05D003650 ORTHO05D004213 9.2e-219 763.8 690 57.5
Nitab4.5_0005195g0070 Nicotiana tabacum HOM05D003650 ORTHO05D004213 9.2e-219 763.8 690 57.4
Gohir.A09G122300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 1.6e-218 763.1 690 57.2
Lj2A385G21 Lonicera japonica HOM05D003650 ORTHO05D004213 1.6e-218 763.1 690 57.0
Aqoxy2G00151 Aquilegia oxysepala HOM05D003650 ORTHO05D004213 2.7e-218 762.3 691 57.7
Ah.13g076450 Amaranthus hybridus HOM05D003650 ORTHO05D004213 3.5e-218 761.9 689 57.8
TAR636G3054 Trochodendron aralioides HOM05D003650 ORTHO05D004213 3.5e-218 761.9 691 57.6
Nitab4.5_0010636g0040 Nicotiana tabacum HOM05D003650 ORTHO05D004213 4.6e-218 761.5 700 56.7
Migut.J01760 Erythranthe guttata HOM05D003650 ORTHO05D004213 6.0e-218 761.1 690 57.7
Sc13g0001770 Simmondsia chinensis HOM05D003650 ORTHO05D004213 1.7e-217 759.6 689 58.1
Gohir.A09G122200 Gossypium hirsutum HOM05D003650 ORTHO05D004213 3.9e-217 758.4 690 56.8
Haze_19859 Corylus avellana HOM05D003650 ORTHO05D004213 1.1e-216 756.9 771 54.0
Ah.04g151780 Amaranthus hybridus HOM05D003650 ORTHO05D004213 1.5e-216 756.5 687 57.6
AT2G41770 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 1.5e-216 756.5 691 56.7
Duzib128G1026 Durio zibethinus HOM05D003650 ORTHO05D004213 1.5e-216 756.5 690 57.7
Thhalv10016286m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 1.5e-216 756.5 691 56.9
Psat6g120000 Pisum sativum HOM05D003650 ORTHO05D004213 3.3e-216 755.4 691 57.0
THA.LOC104802108 Tarenaya hassleriana HOM05D003650 ORTHO05D004213 4.3e-216 755.0 693 56.4
Hund19149 Selenicereus undatus HOM05D003650 ORTHO05D004213 7.3e-216 754.2 689 57.2
Phvul.007G252800 Phaseolus vulgaris HOM05D003650 ORTHO05D004213 9.6e-216 753.8 691 57.3
Lsat_1_v5_gn_9_29041 Lactuca sativa HOM05D003650 ORTHO05D004213 1.6e-215 753.1 689 57.6
AL4G40080 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 2.1e-215 752.7 691 56.6
Carub.0004s2405 Capsella rubella HOM05D003650 ORTHO05D004213 4.7e-215 751.5 691 56.6
PSO339G5560 Papaver somniferum HOM05D003650 ORTHO05D004213 4.7e-215 751.5 691 57.3
TPR.G10642 Trifolium pratense HOM05D003650 ORTHO05D004213 8.1e-215 750.7 691 56.9
HanXRQChr10g0288771 Helianthus annuus HOM05D003650 ORTHO05D004213 1.1e-214 750.4 691 57.5
Duzib205G0897 Durio zibethinus HOM05D003650 ORTHO05D004213 1.8e-214 749.6 691 57.5
Glyma.02G184100 Glycine max HOM05D003650 ORTHO05D004213 1.8e-214 749.6 691 57.3
SGA_v2.0_scaffold69G23114 Striga asiatica HOM05D003650 ORTHO05D004213 4.0e-214 748.4 692 56.6
PSO384G3418 Papaver somniferum HOM05D003650 ORTHO05D004213 5.2e-214 748.0 691 57.2
VMungo0720G2955 Vigna mungo HOM05D003650 ORTHO05D004213 6.9e-214 747.7 691 56.6
Aa31LG1G23780 Aethionema arabicum HOM05D003650 ORTHO05D004213 1.2e-213 746.9 691 56.0
Thhalv10005801m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 2.0e-213 746.1 692 55.8
AUR62026036 Chenopodium quinoa HOM05D003650 ORTHO05D004213 3.4e-213 745.3 689 56.6
DCAR_013601 Daucus carota HOM05D003650 ORTHO05D004213 3.4e-213 745.3 688 56.8
CARHR136860 Cardamine hirsuta HOM05D003650 ORTHO05D004213 5.8e-213 744.6 691 56.4
Lalb_Chr06g0173451 Lupinus albus HOM05D003650 ORTHO05D004213 5.8e-213 744.6 691 57.0
AT3G57420 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 9.9e-213 743.8 692 55.6
Carub.0005s2426 Capsella rubella HOM05D003650 ORTHO05D004213 1.7e-212 743.0 692 55.8
BcaNung02835 Brassica carinata HOM05D003650 ORTHO05D004213 2.2e-212 742.7 686 56.3
AUR62024446 Chenopodium quinoa HOM05D003650 ORTHO05D004213 2.9e-212 742.3 689 56.6
Sp4g24040 Schrenkiella parvula HOM05D003650 ORTHO05D004213 2.9e-212 742.3 691 55.7
A05p02520 Brassica napus HOM05D003650 ORTHO05D004213 4.9e-212 741.5 686 56.1
C04p02980 Brassica napus HOM05D003650 ORTHO05D004213 6.4e-212 741.1 686 56.4
C03p27940 Brassica napus HOM05D003650 ORTHO05D004213 1.4e-211 740.0 691 55.6
BraA03t11559Z Brassica rapa HOM05D003650 ORTHO05D004213 1.9e-211 739.6 691 55.6
BraA05t19245Z Brassica rapa HOM05D003650 ORTHO05D004213 1.9e-211 739.6 686 56.1
A03p23420 Brassica napus HOM05D003650 ORTHO05D004213 3.2e-211 738.8 691 55.6
ECA247G3671 Erigeron canadensis HOM05D003650 ORTHO05D004213 3.2e-211 738.8 691 56.3
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 4.2e-211 738.4 684 56.1
BolC3t15166H Brassica oleracea HOM05D003650 ORTHO05D004213 7.1e-211 737.6 691 55.4
Rhsim03G0022300 Rhododendron simsii HOM05D003650 ORTHO05D004213 9.3e-211 737.3 758 53.7
Sp5g05180 Schrenkiella parvula HOM05D003650 ORTHO05D004213 6.0e-210 734.6 693 55.3
AL5G38950 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.0e-209 733.8 692 55.1
Nn7g36273 Nelumbo nucifera HOM05D003650 ORTHO05D004213 1.3e-209 733.4 675 57.5
Actinidia39226 Actinidia chinensis HOM05D003650 ORTHO05D004213 2.3e-209 732.6 691 57.7
Atru.chr1.1095 Acer truncatum HOM05D003650 ORTHO05D004213 3.0e-209 732.3 619 61.2
CSS0035654 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 1.5e-208 729.9 691 55.9
CSS0046501 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 3.3e-208 728.8 691 55.7
CARHR167620 Cardamine hirsuta HOM05D003650 ORTHO05D004213 1.6e-207 726.5 694 54.6
Rhsim07G0058200 Rhododendron simsii HOM05D003650 ORTHO05D004213 4.8e-207 724.9 691 55.1
Lalb_Chr20g0110481 Lupinus albus HOM05D003650 ORTHO05D004213 3.1e-206 722.2 687 55.6
Rhsim03G0021200 Rhododendron simsii HOM05D003650 ORTHO05D004213 1.1e-203 713.8 832 48.9
vmacro13691 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 1.1e-203 713.8 692 54.6
Prupe.2G020200 Prunus persica HOM05D003650 ORTHO05D004213 1.9e-203 713.0 688 54.1
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 2.4e-203 712.6 673 56.2
ECA248G2213 Erigeron canadensis HOM05D003650 ORTHO05D004213 1.2e-202 710.3 691 55.0
CANSAT80G1317 Cannabis sativa HOM05D003650 ORTHO05D004213 4.6e-202 708.4 617 60.0
Solyc04g015740.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 4.6e-202 708.4 649 57.3
Nitab4.5_0008441g0020 Nicotiana tabacum HOM05D003650 ORTHO05D004213 2.8e-199 699.1 689 54.0
RcHm_v2.0_Chr1g0317301 Rosa chinensis HOM05D003650 ORTHO05D004213 6.2e-199 698.0 690 54.8
MD07G1018300 Malus domestica HOM05D003650 ORTHO05D004213 1.1e-198 697.2 689 52.7
Cc02_g29000 Coffea canephora HOM05D003650 ORTHO05D004213 9.0e-198 694.1 689 53.1
Peaxi162Scf00694g00117 Petunia axillaris HOM05D003650 ORTHO05D004213 9.0e-198 694.1 689 53.1
HanXRQChr01g0008741 Helianthus annuus HOM05D003650 ORTHO05D004213 1.5e-197 693.3 690 53.0
Nitab4.5_0000707g0190 Nicotiana tabacum HOM05D003650 ORTHO05D004213 1.3e-196 690.3 689 53.4
CANSAT80G2225 Cannabis sativa HOM05D003650 ORTHO05D004213 2.9e-196 689.1 693 53.7
CAN.G219.62 Capsicum annuum HOM05D003650 ORTHO05D004213 6.4e-196 688.0 689 53.4
Sopen01g034570 Solanum pennellii HOM05D003650 ORTHO05D004213 1.1e-195 687.2 689 53.1
PGSC0003DMG400006853 Solanum tuberosum HOM05D003650 ORTHO05D004213 1.4e-195 686.8 701 52.8
Lju124C41T4 Lonicera japonica HOM05D003650 ORTHO05D004213 1.9e-195 686.4 664 55.7
CDE07G0124 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 5.5e-195 684.9 690 53.2
Solyc01g087600.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 9.3e-195 684.1 689 52.8
Lsat_1_v5_gn_5_161461 Lactuca sativa HOM05D003650 ORTHO05D004213 2.7e-194 682.6 690 52.9
Oeu027406.1 Olea europaea HOM05D003650 ORTHO05D004213 5.1e-193 678.3 678 52.2
FvH4_7g01460 Fragaria vesca HOM05D003650 ORTHO05D004213 6.7e-193 677.9 690 52.8
FAN06G0077 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.6e-191 673.3 690 52.6
Gohir.D09G118300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 2.9e-188 662.5 551 61.2
Zm00001eb287230 Zea mays HOM05D003650 ORTHO05D004213 1.5e-184 650.2 683 51.0
HPP92_010728 Vanilla planifolia HOM05D003650 ORTHO05D004213 4.3e-184 648.7 692 50.3
ATR0626G026 Amborella trichopoda HOM05D003650 ORTHO05D004213 3.1e-182 642.5 678 50.9
Nn2g15253 Nelumbo nucifera HOM05D003650 ORTHO05D004213 6.5e-180 634.8 518 61.8
Dinv12480 Davidia involucrata HOM05D003650 ORTHO05D004213 1.4e-179 633.6 518 62.0
MELO3C023570.2 Cucumis melo HOM05D003650 ORTHO05D004213 3.3e-176 622.5 693 49.5
CsaV3_7G030820 Cucumis sativus L. HOM05D003650 ORTHO05D004213 1.3e-175 620.5 693 49.6
Sed0006713 Sechium edule HOM05D003650 ORTHO05D004213 5.3e-174 615.1 695 49.1
ClCG09G003920 Citrullus lanatus HOM05D003650 ORTHO05D004213 5.9e-173 611.7 691 49.1
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.3e-172 610.5 682 49.3
Dinv09321 Davidia involucrata HOM05D003650 ORTHO05D004213 5.1e-169 598.6 518 58.5
FAN10G4002 Fragaria x ananassa HOM05D003650 ORTHO05D004213 3.4e-165 585.9 690 48.7
SEGI_32089 Sequoiadendron giganteum HOM05D003650 ORTHO05D004213 3.6e-162 575.9 690 45.2
Gorai.006G136700 Gossypium raimondii HOM05D003650 ORTHO05D004213 1.2e-154 550.8 683 46.1
Oeu023110.1 Olea europaea HOM05D003650 ORTHO05D004213 3.6e-154 549.3 475 60.2
Zm00001eb329540 Zea mays HOM05D003650 ORTHO05D004213 6.1e-154 548.5 621 47.0
Medtr0121s0010 Medicago truncatula HOM05D003650 ORTHO05D004213 1.1e-150 537.7 475 58.9
Os07g0656400 Oryza sativa ssp. japonica HOM05D003650 ORTHO05D004213 1.2e-149 534.3 621 45.9
CDE11G0464 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 3.8e-148 529.3 650 46.5
GSVIVG01032164001 Vitis vinifera HOM05D003650 ORTHO05D004213 8.0e-138 495.0 438 58.2
CsaV3_3G039750 Cucumis sativus L. HOM05D003650 ORTHO05D004213 1.7e-135 487.3 406 64.8
Os05g0391200 Oryza sativa ssp. japonica HOM05D003650 ORTHO05D004213 4.3e-131 472.6 470 53.4
Dinv39600 Davidia involucrata HOM05D003650 ORTHO05D004213 1.6e-130 470.7 633 44.5
unitig_26.g9048 Utricularia gibba HOM05D003650 ORTHO05D004213 3.0e-116 423.3 351 59.5
Mapoly0004s0304 Marchantia polymorpha HOM05D003650 ORTHO05D004213 8.3e-111 405.2 662 35.2
Pp3c14_20380 Physcomitrium patens HOM05D003650 ORTHO05D004213 1.2e-106 391.3 682 33.9
SMO329G0078 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 4.4e-104 382.9 662 34.0
Pp3c17_18550 Physcomitrium patens HOM05D003650 ORTHO05D004213 2.4e-102 377.1 669 32.1
SMO165G0114 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 4.3e-91 339.7 619 33.6
CDE11G0341 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 2.4e-73 280.8 202 65.3
AL4G39870 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 2.0e-72 277.7 167 77.2
BcaNung06246 Brassica carinata HOM05D003650 ORTHO05D004213 3.2e-70 270.4 310 48.1
unitig_26.g9047 Utricularia gibba HOM05D003650 ORTHO05D004213 1.7e-58 231.5 266 47.0
CDE11G0987 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 8.5e-47 192.6 231 48.9
AL4G39860 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 2.1e-45 188.0 193 50.3
Actinidia02535 Actinidia chinensis HOM05D003650 ORTHO05D004213 9.1e-33 146.0 543 26.7
Lalb_Chr21g0316481 Lupinus albus HOM05D003650 ORTHO05D004213 2.7e-32 144.4 122 60.7
Oeu022754.1 Olea europaea HOM05D003650 ORTHO05D004213 1.7e-31 141.7 112 63.4
CARHR167380 Cardamine hirsuta HOM05D003650 ORTHO05D004213 2.2e-26 124.8 76 76.3
Actinidia19412 Actinidia chinensis HOM05D003650 ORTHO05D004213 2.8e-26 124.4 93 63.4
CARHR167370 Cardamine hirsuta HOM05D003650 ORTHO05D004213 9.1e-25 119.4 138 48.6
Rhsim03G0147000 Rhododendron simsii HOM05D003650 ORTHO05D004213 6.1e-13 80.1 68 61.8
RhsimUnG0102900 Rhododendron simsii HOM05D002707 ORTHO05D002925 3.7e-10 70.9 98 49.0
CDE06G0299 Ceratophyllum demersum HOM05D000016 ORTHO05D000487 7.8e-08 63.2 42 69.0


User provided reference genes

Program Settings