Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 3.8e-120 434.9 225 100.0
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.3e-95 352.1 229 80.8
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 4.7e-94 348.2 230 81.3
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 9.9e-68 260.8 232 62.9
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.8e-61 240.0 200 62.5
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.1e-58 230.7 164 71.3
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 5.4e-58 228.4 193 63.7
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.6e-57 226.9 146 76.0
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.7e-56 223.4 240 55.8
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.5e-55 220.3 229 58.5
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 4.3e-55 218.8 175 64.0
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 7.4e-55 218.0 226 52.7
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.3e-54 217.2 153 71.2
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.3e-54 217.2 203 56.7
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 3.6e-54 215.7 198 60.6
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 3.6e-54 215.7 190 60.0
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 3.6e-54 215.7 154 70.1
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 4.8e-54 215.3 161 65.8
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 6.2e-54 214.9 182 58.8
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 6.2e-54 214.9 197 59.9
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.4e-53 213.8 213 55.9
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 6.9e-53 211.5 147 68.7
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 6.9e-53 211.5 147 69.4
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 9.0e-53 211.1 175 61.1
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.2e-52 210.7 174 62.6
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.0e-52 209.9 146 68.5
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 5.8e-52 208.4 176 61.4
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.3e-51 207.2 148 68.9
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 2.2e-51 206.5 150 68.0
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.8e-51 205.7 146 69.2
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 4.9e-51 205.3 199 56.3
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.1e-50 204.1 183 59.0
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 9.3e-50 201.1 151 66.2
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.6e-49 200.3 148 66.9
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 7.9e-49 198.0 147 66.0
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.0e-48 197.6 190 57.9
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 1.3e-48 197.2 148 66.9
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.8e-48 196.8 148 67.6
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 6.7e-48 194.9 151 66.2
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 8.7e-48 194.5 152 64.5
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.1e-47 194.1 148 66.9
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.5e-47 193.7 148 66.9
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 4.3e-47 192.2 155 61.3
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 5.6e-47 191.8 179 58.7
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 8.1e-46 188.0 145 66.9
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.4e-45 186.4 168 57.1
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 3.1e-45 186.0 218 51.8
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 9.0e-45 184.5 197 51.8
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 3.8e-43 179.1 148 64.2
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 4.9e-43 178.7 148 63.5
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 8.4e-43 177.9 159 61.6
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.1e-42 177.6 182 53.3
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.9e-42 176.8 154 58.4
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.2e-42 176.0 160 57.5
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 3.2e-42 176.0 161 57.8
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.7e-41 172.9 123 69.1
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 8.7e-40 167.9 154 56.5
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.5e-39 167.2 202 46.0
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 7.4e-39 164.9 151 58.3
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 9.6e-39 164.5 150 60.0
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 2.8e-38 162.9 111 68.5
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.1e-37 161.0 180 53.9
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 6.9e-37 158.3 172 48.3
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.5e-36 157.1 130 62.3
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.3e-35 154.1 148 55.4
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 8.4e-35 151.4 138 60.1
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 8.4e-35 151.4 160 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 2.5e-34 149.8 151 52.3
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.6e-33 147.1 158 45.6
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.1e-33 146.7 274 34.7
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 1.8e-32 143.7 149 49.7
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 6.7e-32 141.7 183 44.3
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 8.7e-32 141.4 135 54.1
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 9.7e-31 137.9 145 53.1
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 9.7e-31 137.9 134 54.5
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 3.7e-30 136.0 165 48.5
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 4.1e-29 132.5 132 45.5
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 3.8e-27 125.9 108 59.3
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 3.8e-27 125.9 108 59.3
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 9.4e-26 121.3 83 72.3
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.4e-24 117.5 188 34.0
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 3.0e-24 116.3 192 37.5
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 5.1e-24 115.5 200 31.0
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 6.7e-24 115.2 126 42.1
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 2.0e-23 113.6 128 41.4
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 3.3e-23 112.8 170 35.3
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 4.3e-23 112.5 126 39.7
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 4.3e-23 112.5 123 41.5
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 5.7e-23 112.1 126 39.7
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 7.4e-23 111.7 126 39.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 9.7e-23 111.3 126 39.7
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 9.7e-23 111.3 122 41.8
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.3e-22 110.9 213 31.0
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.7e-22 110.5 120 40.0
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 2.2e-22 110.2 146 37.7
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.8e-22 109.8 122 41.0
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 2.8e-22 109.8 124 39.5
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 4.8e-22 109.0 165 33.3
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 4.8e-22 109.0 148 34.5
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 6.3e-22 108.6 166 32.5
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 8.2e-22 108.2 183 31.7
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 8.2e-22 108.2 183 31.7
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 8.2e-22 108.2 152 34.9
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.1e-21 107.8 213 31.0
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.1e-21 107.8 157 34.4
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.4e-21 107.5 175 32.0
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 1.4e-21 107.5 83 63.9
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.8e-21 107.1 184 33.2
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.8e-21 107.1 118 41.5
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.4e-21 106.7 125 38.4
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.4e-21 106.7 200 33.5
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.4e-21 106.7 115 41.7
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.4e-21 106.7 148 35.8
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.1e-21 106.3 138 38.4
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 4.1e-21 105.9 123 39.0
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 4.1e-21 105.9 175 32.0
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 5.3e-21 105.5 121 38.8
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 9.1e-21 104.8 163 31.9
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 9.1e-21 104.8 140 35.0
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 9.1e-21 104.8 143 35.0
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.2e-20 104.4 128 38.3
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.5e-20 104.0 178 36.0
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.5e-20 104.0 112 54.5
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.0e-20 103.6 151 33.8
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.0e-20 103.6 204 29.4
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 2.0e-20 103.6 120 39.2
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.6e-20 103.2 112 54.5
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.6e-20 103.2 132 37.1
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.9e-20 102.1 153 35.9
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 5.9e-20 102.1 142 38.7
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 5.9e-20 102.1 120 38.3
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 7.7e-20 101.7 146 36.3
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 7.7e-20 101.7 98 58.2
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.0e-19 101.3 155 34.8
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.3e-19 100.9 121 36.4
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.2e-19 100.1 161 32.9
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 2.2e-19 100.1 161 32.9
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.8e-19 99.4 110 54.5
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 5.0e-19 99.0 171 33.3
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 6.5e-19 98.6 145 36.6
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 6.5e-19 98.6 113 39.8
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 8.5e-19 98.2 70 64.3
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.4e-18 97.4 121 37.2
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.9e-18 97.1 223 28.3
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.9e-18 97.1 192 28.1
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 2.5e-18 96.7 132 35.6
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 3.2e-18 96.3 136 34.6
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 5.5e-18 95.5 124 38.7
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 5.5e-18 95.5 70 70.0
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 5.5e-18 95.5 70 70.0
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 7.2e-18 95.1 148 33.1
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.2e-17 94.4 141 34.0
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.1e-17 93.6 158 29.7
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 3.6e-17 92.8 128 34.4
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 6.1e-17 92.0 137 40.1
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.9e-16 89.4 183 28.4
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 5.1e-16 89.0 91 45.1
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 4.4e-15 85.9 141 31.2
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 5.7e-15 85.5 150 29.3
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 6.3e-14 82.0 131 32.1
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.2e-14 81.6 170 27.6
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.6e-12 77.4 128 32.0
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 4.5e-12 75.9 176 26.1
Haze_01371 Corylus avellana HOM05D003796 ORTHO05D004486 5.9e-12 75.5 112 43.8
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 8.0e-09 65.1 103 33.0
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.0e-08 62.8 72 41.7
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 6.7e-08 62.0 72 37.5


User provided reference genes

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