Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 4.3e-127 458.0 227 100.0
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 5.2e-101 371.3 227 80.6
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 1.2e-100 370.2 227 81.1
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.2e-84 317.0 228 70.6
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.3e-83 313.5 222 68.5
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.7e-83 313.2 228 70.2
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 2.2e-83 312.8 231 69.7
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 4.9e-83 311.6 201 74.6
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 5.4e-82 308.1 227 68.3
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 7.1e-82 307.8 228 69.3
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 1.2e-81 307.0 229 65.5
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.6e-81 306.6 227 68.3
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.1e-81 306.2 227 67.4
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 2.7e-81 305.8 231 66.7
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 6.0e-81 304.7 228 66.2
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 7.9e-81 304.3 228 68.0
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 7.9e-81 304.3 224 66.1
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 2.3e-80 302.8 228 68.9
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 3.0e-80 302.4 232 64.2
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.9e-80 302.0 227 67.8
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 5.1e-80 301.6 228 66.7
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 5.1e-80 301.6 227 66.5
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 6.7e-80 301.2 222 67.1
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.5e-79 300.1 196 74.5
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.9e-79 299.7 227 63.9
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 2.5e-79 299.3 227 64.8
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 2.5e-79 299.3 219 67.6
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 3.3e-79 298.9 228 68.0
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 3.3e-79 298.9 229 65.5
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 4.3e-79 298.5 228 67.1
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 4.3e-79 298.5 227 66.5
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 7.4e-79 297.7 209 69.4
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 7.4e-79 297.7 224 65.6
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 7.4e-79 297.7 219 67.1
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 9.6e-79 297.4 208 68.3
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 9.6e-79 297.4 226 65.5
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 9.6e-79 297.4 231 66.2
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.6e-78 296.6 234 66.2
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 3.7e-78 295.4 231 65.4
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 8.1e-78 294.3 227 65.2
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.1e-77 293.9 230 63.9
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.1e-77 293.9 229 63.8
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 1.8e-77 293.1 212 70.3
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 1.8e-77 293.1 214 65.4
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 5.3e-77 291.6 228 64.5
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 9.0e-77 290.8 227 64.3
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 9.0e-77 290.8 228 64.9
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 9.0e-77 290.8 179 76.0
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 1.2e-76 290.4 229 63.3
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 3.4e-76 288.9 201 68.7
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 4.5e-76 288.5 227 65.6
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 4.5e-76 288.5 213 66.2
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 5.8e-76 288.1 227 63.9
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 5.8e-76 288.1 227 63.0
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 7.6e-76 287.7 231 65.4
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 1.0e-75 287.3 236 64.4
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 1.7e-75 286.6 209 68.4
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 1.7e-75 286.6 187 71.1
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 2.9e-75 285.8 176 75.0
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 8.4e-75 284.3 200 67.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.1e-74 283.9 172 76.7
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 1.1e-74 283.9 222 63.1
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 5.5e-74 281.6 231 62.3
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 5.5e-74 281.6 219 63.0
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 2.1e-73 279.6 234 60.7
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 2.7e-73 279.3 227 67.0
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 4.6e-73 278.5 228 64.0
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 1.0e-72 277.3 228 64.9
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 1.0e-72 277.3 222 61.3
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.5e-71 273.5 228 63.6
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.9e-71 273.1 228 63.6
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 2.5e-71 272.7 189 68.8
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 3.3e-71 272.3 228 63.6
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 5.7e-71 271.6 197 67.0
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 3.7e-70 268.9 228 62.3
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.4e-69 266.9 228 62.7
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 1.4e-69 266.9 228 62.7
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 2.4e-69 266.2 230 63.0
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 2.4e-69 266.2 227 61.2
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.4e-69 266.2 227 62.6
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 3.1e-69 265.8 155 77.4
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 5.3e-69 265.0 168 75.6
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 6.9e-69 264.6 228 62.3
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 2.0e-68 263.1 229 62.4
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 2.6e-68 262.7 227 60.8
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 2.6e-68 262.7 227 63.0
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 5.8e-68 261.5 181 66.3
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 1.0e-67 260.8 223 58.7
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 5.0e-67 258.5 227 60.4
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.2e-66 255.8 153 77.8
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 4.2e-66 255.4 225 58.7
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.2e-65 253.8 155 78.1
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.2e-65 253.8 162 74.1
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 2.1e-65 253.1 180 64.4
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.8e-64 250.0 182 64.8
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 7.4e-63 244.6 209 55.5
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 1.3e-62 243.8 158 73.4
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 6.3e-62 241.5 227 54.6
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 3.1e-61 239.2 227 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 4.1e-61 238.8 170 64.1
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.3e-59 233.8 152 67.1
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 2.2e-59 233.0 174 65.5
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.4e-58 230.3 232 53.4
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.2e-57 227.3 184 64.1
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 3.6e-57 225.7 254 51.2
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.1e-53 214.2 113 90.3
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 5.9e-52 208.4 205 51.2
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 2.9e-51 206.1 220 50.9
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.9e-50 203.4 172 62.2
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 8.8e-48 194.5 215 50.7
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 2.2e-43 179.9 113 75.2
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.7e-41 172.9 114 78.1
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.8e-40 170.2 111 72.1
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.2e-38 161.4 95 80.0
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 7.0e-37 158.3 155 51.0
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 4.2e-34 149.1 121 59.5
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 7.2e-34 148.3 131 57.3
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.8e-32 143.7 160 46.2
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.0e-31 140.2 95 67.4
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.8e-31 137.9 76 81.6
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.3e-30 137.5 84 72.6
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.8e-30 136.3 100 62.0
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 3.8e-27 125.9 146 50.0
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 6.5e-27 125.2 70 82.9
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 8.0e-25 118.2 70 78.6
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 1.2e-20 104.4 110 51.8
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 2.0e-20 103.6 80 60.0
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 3.3e-18 96.3 54 77.8
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 4.0e-16 89.4 94 51.1
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 9.8e-15 84.7 72 55.6
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 1.3e-11 74.3 59 59.3


User provided reference genes

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