Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 4.5e-79 298.1 180 100.0
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 9.1e-40 167.5 182 56.6
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 6.8e-19 98.2 186 48.4
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.7e-18 95.1 191 48.2
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 1.3e-17 94.0 184 52.2
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 4.1e-16 89.0 202 43.1
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.6e-15 87.0 86 54.7
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 7.8e-15 84.7 57 68.4
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 2.3e-14 83.2 73 57.5
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 2.3e-14 83.2 82 50.0
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 8.6e-14 81.3 101 43.6
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 2.5e-13 79.7 81 54.3
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 4.3e-13 79.0 102 45.1
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 4.3e-13 79.0 78 48.7
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 5.6e-13 78.6 82 52.4
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 7.3e-13 78.2 67 58.2
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 9.5e-13 77.8 77 50.6
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 2.1e-12 76.6 112 46.4
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 2.1e-12 76.6 79 48.1
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 2.1e-12 76.6 79 54.4
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 2.8e-12 76.3 58 62.1
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 3.6e-12 75.9 81 53.1
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 3.6e-12 75.9 60 56.7
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.6e-12 75.9 49 71.4
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 3.6e-12 75.9 64 54.7
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 6.2e-12 75.1 79 53.2
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 6.2e-12 75.1 56 57.1
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 8.0e-12 74.7 82 50.0
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 8.0e-12 74.7 47 72.3
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 8.0e-12 74.7 69 56.5
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.4e-11 73.9 78 46.2
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 1.8e-11 73.6 56 60.7
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 1.8e-11 73.6 50 70.0
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 2.3e-11 73.2 74 51.4
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 4.0e-11 72.4 82 46.3
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 4.0e-11 72.4 87 44.8
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 5.2e-11 72.0 43 74.4
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 6.8e-11 71.6 85 44.7
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 8.9e-11 71.2 44 70.5
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.2e-10 70.9 75 49.3
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.2e-10 70.9 75 49.3
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.2e-10 70.9 76 50.0
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 1.2e-10 70.9 45 66.7
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.5e-10 70.5 57 59.6
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 1.5e-10 70.5 62 53.2
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.5e-10 70.5 62 53.2
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.5e-10 70.5 65 56.9
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.5e-10 70.5 44 70.5
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 2.0e-10 70.1 84 45.2
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 2.0e-10 70.1 82 41.5
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.0e-10 70.1 88 43.2
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.6e-10 69.7 87 44.8
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.6e-10 69.7 49 67.3
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 3.4e-10 69.3 75 49.3
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 3.4e-10 69.3 83 50.6
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.4e-10 69.3 65 55.4
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 4.4e-10 68.9 154 33.1
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 5.8e-10 68.6 73 50.7
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 5.8e-10 68.6 112 35.7
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 5.8e-10 68.6 82 48.8
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 5.8e-10 68.6 69 53.6
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 7.5e-10 68.2 81 46.9
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 9.8e-10 67.8 192 30.2
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 9.8e-10 67.8 84 47.6
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 1.7e-09 67.0 86 44.2
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 1.7e-09 67.0 179 37.4
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 2.9e-09 66.2 45 62.2
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.9e-09 66.2 77 48.1
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.9e-09 66.2 160 36.9
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 2.9e-09 66.2 72 50.0
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 4.9e-09 65.5 81 43.2
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 6.4e-09 65.1 65 50.8
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 8.3e-09 64.7 72 51.4
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 8.3e-09 64.7 81 43.2
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.4e-08 63.9 82 39.0
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 2.4e-08 63.2 64 50.0
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 2.4e-08 63.2 182 37.9
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 3.2e-08 62.8 181 41.4
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 3.2e-08 62.8 81 45.7
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-08 62.8 58 50.0
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-08 62.8 161 32.3
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 4.1e-08 62.4 85 45.9
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 5.4e-08 62.0 40 67.5
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 7.0e-08 61.6 53 54.7
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 7.0e-08 61.6 81 42.0
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 7.0e-08 61.6 88 44.3
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.2e-07 60.8 55 54.5
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.2e-07 60.8 78 44.9
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.2e-07 60.8 75 45.3
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.2e-07 60.8 93 41.9
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.6e-07 60.5 71 46.5
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.6e-07 60.5 71 46.5
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.6e-07 60.5 91 44.0
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.7e-07 59.7 81 43.2
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 2.7e-07 59.7 80 45.0
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 3.5e-07 59.3 49 57.1
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.6e-07 58.9 44 56.8
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 6.0e-07 58.5 116 35.3
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 7.8e-07 58.2 79 41.8
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 1.0e-06 57.8 49 55.1
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 1.0e-06 57.8 49 55.1
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.7e-06 57.0 56 50.0
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 1.7e-06 57.0 50 54.0
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.7e-06 57.0 50 54.0
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.7e-06 57.0 50 54.0
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.7e-06 57.0 50 54.0
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 1.7e-06 57.0 181 34.8
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.7e-06 57.0 161 31.7
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.3e-06 56.6 115 36.5
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 3.0e-06 56.2 107 36.4
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 3.0e-06 56.2 87 41.4
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-06 56.2 58 46.6
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 5.0e-06 55.5 81 42.0
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 8.6e-06 54.7 86 44.2
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.6e-06 54.7 68 42.6


User provided reference genes

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