Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 2.4e-60 235.3 120 100.0
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 3.7e-53 211.5 126 86.5
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 6.9e-52 207.2 126 84.1
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 3.4e-51 204.9 126 83.3
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 1.5e-22 109.8 131 47.3
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.4e-20 103.2 126 45.2
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 7.7e-19 97.4 127 44.9
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 2.2e-18 95.9 121 43.8
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 2.2e-18 95.9 132 40.9
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 3.8e-18 95.1 132 43.2
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.9e-17 92.8 129 42.6
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 5.5e-17 91.3 128 43.8
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 7.2e-17 90.9 133 41.4
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 9.4e-17 90.5 120 39.2
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 2.7e-16 89.0 124 41.9
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 4.7e-16 88.2 131 41.2
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 4.7e-16 88.2 129 41.1
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 8.0e-16 87.4 129 40.3
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 8.0e-16 87.4 129 40.3
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 1.4e-15 86.7 130 37.7
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.8e-15 86.3 124 38.7
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 2.3e-15 85.9 125 42.4
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 3.0e-15 85.5 124 37.9
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 3.0e-15 85.5 124 37.9
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 4.0e-15 85.1 129 38.8
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 5.2e-15 84.7 126 38.9
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 6.8e-15 84.3 142 33.1
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 8.8e-15 84.0 129 39.5
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 8.8e-15 84.0 126 38.1
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 8.8e-15 84.0 126 38.1
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.2e-14 83.6 128 35.9
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 2.6e-14 82.4 136 39.7
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 2.6e-14 82.4 130 38.5
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 4.4e-14 81.6 130 36.9
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 7.5e-14 80.9 127 37.8
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 9.8e-14 80.5 123 40.7
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 9.8e-14 80.5 126 35.7
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 9.8e-14 80.5 112 41.1
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 1.3e-13 80.1 132 40.2
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.7e-13 79.7 131 35.9
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 2.2e-13 79.3 131 35.9
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 2.2e-13 79.3 131 37.4
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 2.8e-13 79.0 129 38.0
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 2.8e-13 79.0 132 37.9
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 2.8e-13 79.0 129 38.8
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 3.7e-13 78.6 126 38.1
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 3.7e-13 78.6 127 38.6
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 3.7e-13 78.6 133 36.1
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 4.8e-13 78.2 131 35.1
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 6.3e-13 77.8 126 37.3
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 8.3e-13 77.4 131 36.6
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.1e-12 77.0 129 37.2
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.1e-12 77.0 129 37.2
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 1.4e-12 76.6 131 37.4
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 1.4e-12 76.6 131 37.4
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 1.4e-12 76.6 131 37.4
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.4e-12 76.6 127 37.0
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 1.8e-12 76.3 131 33.6
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 4.1e-12 75.1 131 37.4
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 4.1e-12 75.1 127 36.2
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 4.1e-12 75.1 126 37.3
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 5.4e-12 74.7 131 35.1
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 5.4e-12 74.7 124 34.7
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 9.1e-12 73.9 106 41.5
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 1.2e-11 73.6 129 36.4
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.2e-11 73.6 126 37.3
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 1.2e-11 73.6 119 38.7
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 1.6e-11 73.2 119 37.8
ClCG02G011420 Citrullus lanatus HOM05D005726 ORTHO05D001733 1.6e-11 73.2 117 37.6
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 2.0e-11 72.8 118 36.4
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 2.7e-11 72.4 131 35.1
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 2.7e-11 72.4 131 35.1
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 2.7e-11 72.4 130 38.5
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 3.5e-11 72.0 121 37.2
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 3.5e-11 72.0 116 38.8
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.0e-10 70.5 111 36.9
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 1.3e-10 70.1 117 39.3
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 1.3e-10 70.1 129 34.9
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 1.9e-09 66.2 110 35.5
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 7.2e-09 64.3 105 37.1
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 1.2e-08 63.5 129 36.4
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 8.0e-08 60.8 126 31.7
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 8.0e-08 60.8 119 36.1
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 1.0e-07 60.5 119 36.1
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 1.4e-07 60.1 111 38.7
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 5.2e-07 58.2 117 35.0
Medtr4g094472 Medicago truncatula HOM05D018548 ORTHO05D020752 6.8e-07 57.8 117 35.9
TPR.G23812 Trifolium pratense HOM05D018548 ORTHO05D020752 1.2e-06 57.0 117 35.9
TPR.G38487 Trifolium pratense HOM05D005726 ORTHO05D001733 2.6e-06 55.8 78 41.0
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 4.4e-06 55.1 126 29.4
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 7.5e-06 54.3 126 31.7
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 9.8e-06 53.9 126 31.7


User provided reference genes

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